genome.fa.s2734.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002734.1 Hibiscus syriacus cultivar Beakdansim tig00005638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149778

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888--915	2	14.0	2	100	0	56	50	0	0	50	1.00
6574--6610	5	7.0	5	93	6	56	56	18	5	18	1.60
9377--9482	55	1.9	55	94	0	185	47	5	27	19	1.72
10132--10156	13	1.9	13	100	0	50	68	0	0	32	0.90
14888--14982	33	2.8	34	95	3	174	52	10	9	27	1.66
15443--15477	2	18.0	2	94	5	63	51	0	0	48	1.00
15559--15603	11	3.3	14	77	22	51	37	0	15	46	1.46
15613--15643	15	2.1	15	93	0	53	45	6	19	29	1.75
16318--16405	35	2.5	35	81	3	97	32	7	17	42	1.78
18048--18153	45	2.4	45	96	0	194	30	15	13	41	1.85
21756--21800	21	2.1	21	88	8	65	53	4	8	33	1.52
29032--29104	3	24.0	3	77	13	60	41	1	1	56	1.16
29032--29102	17	4.4	16	80	15	74	40	1	1	56	1.17
29028--29104	14	5.8	13	73	21	52	40	1	1	57	1.15
30622--30669	22	2.2	21	85	10	62	45	2	0	52	1.12
32891--32931	21	2.0	21	85	9	57	48	14	26	9	1.75
38002--38494	119	4.1	118	91	1	718	32	16	18	32	1.94
38640--38718	3	27.0	3	78	14	85	37	1	0	60	1.05
38636--38718	26	3.2	26	80	11	100	37	1	0	61	1.04
40943--41000	19	3.1	19	73	14	57	51	0	0	48	1.00
40927--41049	43	2.9	42	84	9	151	50	0	0	48	1.06
41876--41931	20	2.8	20	83	8	69	25	25	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42501--42546	21	2.2	20	84	3	56	13	13	28	45	1.80
58532--58582	21	2.4	21	96	0	93	29	17	0	52	1.45
62000--62045	22	2.0	24	84	16	62	56	0	4	39	1.19
62131--62193	28	2.2	28	91	0	99	39	23	7	28	1.83
62461--62502	13	3.2	13	80	13	50	28	2	0	69	1.01
66218--66271	2	27.0	2	100	0	108	50	0	0	50	1.00
70135--70601	229	2.0	229	89	1	711	30	17	15	35	1.91
71739--71799	18	3.1	21	72	15	58	40	4	1	52	1.33
77994--78023	14	2.1	14	100	0	60	36	20	13	30	1.90
77992--78030	14	2.5	16	80	20	55	33	15	17	33	1.92
85363--85399	19	1.9	19	88	0	56	29	29	18	21	1.97
85446--85497	21	2.5	21	81	6	61	25	21	23	30	1.99
85527--85571	20	2.2	20	92	0	72	26	26	20	26	1.99
86114--86183	14	4.6	14	77	16	77	15	21	24	38	1.92
88015--88076	31	2.0	31	87	9	90	22	8	17	51	1.71
88195--88360	20	8.6	20	75	10	148	37	24	19	19	1.94
88366--88446	33	2.4	34	87	2	119	16	19	23	40	1.90
88418--88466	20	2.5	20	86	0	62	20	18	24	36	1.94
88453--88496	20	2.2	20	100	0	88	13	11	22	52	1.72
89004--89063	21	2.8	22	73	16	63	23	40	16	20	1.91
90455--90520	30	2.2	30	100	0	132	28	3	13	54	1.54
90617--90859	20	12.8	20	76	13	201	22	19	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90617--90859	54	4.3	60	77	14	246	22	19	21	36	1.95
90735--90812	34	2.3	34	95	0	138	17	23	20	38	1.93
90735--90831	34	2.9	34	88	0	113	19	22	19	38	1.94
94199--94338	20	6.9	20	74	11	115	25	21	23	29	1.99
94199--94336	61	2.3	61	92	2	224	26	21	23	29	1.99
94277--94367	41	2.2	41	84	0	119	24	20	24	30	1.99
94435--94488	20	2.7	21	71	8	58	31	12	29	25	1.93
95701--95739	17	2.3	17	100	0	78	28	35	5	30	1.79
96143--96182	21	1.9	21	85	10	55	25	17	30	27	1.97
96738--96769	10	3.1	10	91	8	55	18	31	31	18	1.95
100291--100365	32	2.3	32	88	0	105	44	20	13	22	1.86
106081--106137	30	1.9	30	92	0	96	38	24	28	8	1.85
106676--106726	24	2.1	24	82	7	59	25	3	11	58	1.50
108385--108444	13	4.8	13	76	15	72	26	0	1	71	0.95
108385--108449	21	3.3	20	73	20	66	26	0	1	72	0.94
108387--108449	29	2.2	29	83	11	76	25	0	1	73	0.93
108389--108431	16	2.7	16	88	0	59	25	0	2	72	0.97
108698--108760	27	2.3	27	83	2	81	71	1	0	26	0.95
108714--108751	15	2.5	15	95	4	67	71	0	0	28	0.87
109273--109430	21	7.8	20	72	7	86	38	25	17	18	1.92
109395--109446	20	2.6	20	84	6	70	46	26	15	11	1.80
109397--109706	40	7.8	40	91	0	361	37	24	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109436--109708	20	13.6	20	73	17	201	36	24	17	21	1.94
109397--109686	60	4.8	60	80	6	302	37	25	17	20	1.94
109451--109706	60	4.3	60	86	3	320	36	24	17	21	1.95
110389--110435	24	2.0	24	87	8	69	25	14	21	38	1.92
112863--113027	33	4.7	34	81	13	183	46	18	21	13	1.83
112877--113065	19	10.7	19	78	17	219	45	17	21	15	1.85
112863--113065	52	3.9	52	86	10	281	45	18	21	14	1.85
113074--113171	19	5.4	19	84	13	143	14	22	17	45	1.84
113055--113171	53	2.2	53	96	1	218	13	24	17	43	1.86
113278--113314	14	2.6	14	86	0	56	45	18	0	35	1.50
115165--115230	19	3.4	20	87	6	91	45	27	16	10	1.80
115202--115294	33	2.8	33	91	0	159	46	21	20	11	1.82
115244--115299	19	3.2	19	76	21	68	46	19	23	10	1.81
115221--115277	14	3.7	14	72	20	51	43	22	21	12	1.85
115295--115423	19	7.3	19	75	17	125	8	17	28	45	1.77
115295--115386	33	2.8	33	93	3	150	7	18	28	45	1.76
115470--115938	93	5.1	93	99	0	922	46	19	12	21	1.83
117641--117738	14	6.3	14	69	21	61	45	21	22	10	1.81
117636--117750	33	3.5	33	95	0	212	46	20	21	11	1.81
117658--117755	19	5.7	19	69	22	90	44	21	21	12	1.84
117751--117869	21	6.3	19	77	13	95	10	22	21	45	1.82
117793--117870	41	1.9	41	97	0	147	12	25	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117794--117869	21	3.7	21	83	3	109	11	25	17	46	1.82
117949--118019	33	2.2	33	92	0	115	47	18	22	11	1.80
118201--118255	22	2.5	22	81	0	74	20	16	40	23	1.91
118402--118555	20	7.7	20	80	7	150	18	17	26	37	1.93
118401--118555	40	3.8	40	79	4	168	18	17	26	37	1.93
118542--118624	21	4.0	21	73	6	78	25	16	24	33	1.96
118522--118620	42	2.4	43	77	11	100	21	18	23	37	1.94
122698--122738	21	1.9	21	85	5	55	46	0	9	43	1.36
123818--123869	15	3.5	15	91	0	86	7	17	67	7	1.39
124713--124769	25	2.3	25	85	11	73	49	14	10	26	1.75
134779--134817	20	2.0	20	100	0	78	51	20	10	17	1.74
138419--138491	36	2.0	36	100	0	146	39	19	21	19	1.92
140149--140415	74	3.6	75	80	4	290	38	20	19	20	1.94
140080--140415	75	4.5	75	77	8	274	38	20	20	21	1.94
140374--140525	81	1.9	81	81	8	184	38	24	18	19	1.93
141213--141246	12	2.8	12	100	0	68	32	0	0	67	0.91
143223--143339	58	2.0	58	100	0	234	41	15	18	23	1.89
149122--149151	15	2.0	15	100	0	60	13	0	26	60	1.34

Tables:   1

The End!