genome.fa.s2735.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002735.1 Hibiscus syriacus cultivar Beakdansim tig00005639_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121610

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7212--7244	6	5.7	6	96	3	59	0	45	0	54	0.99
9901--10002	39	2.6	39	95	0	177	59	10	6	22	1.54
9941--10002	17	3.4	17	70	20	52	62	11	4	20	1.46
14022--14136	51	2.3	51	92	0	185	36	12	4	46	1.61
17767--17812	2	23.0	2	81	0	56	41	0	6	52	1.27
17774--17817	22	2.0	22	90	0	70	36	0	11	52	1.38
20254--20670	204	2.0	207	90	4	662	24	12	19	43	1.86
24611--24715	51	2.0	52	92	1	176	37	13	31	18	1.89
31159--31218	18	3.7	18	72	22	69	45	16	1	36	1.58
31159--31219	31	2.0	31	96	0	113	44	16	1	37	1.58
31371--31442	35	2.1	35	97	0	135	51	8	2	37	1.47
31953--31992	19	2.1	19	100	0	80	10	42	30	17	1.82
35847--35884	15	2.5	15	87	8	51	42	0	13	44	1.43
37177--37237	18	3.8	16	74	24	56	44	14	1	39	1.55
37171--37241	31	2.3	31	90	0	115	45	16	1	36	1.57
37192--37221	13	2.2	14	94	5	53	46	13	0	40	1.43
43535--43571	19	1.9	19	88	0	56	64	0	0	35	0.94
43540--43570	14	2.1	15	94	5	55	64	0	0	35	0.94
44814--44883	34	2.1	32	84	5	86	24	28	15	31	1.96
45237--45309	20	3.7	20	92	0	110	30	23	27	19	1.98
45587--45626	21	1.9	21	89	0	62	50	10	10	30	1.69
46634--46681	19	2.5	20	89	3	71	29	10	6	54	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49171--49229	31	1.9	31	89	6	93	44	3	5	47	1.42
49254--49502	22	11.3	22	85	1	320	48	8	0	42	1.36
49254--49509	66	3.9	66	90	1	363	47	8	0	43	1.36
49865--49897	3	11.0	3	100	0	66	66	0	0	33	0.92
54994--55125	58	2.2	60	78	5	135	42	0	12	44	1.47
55607--55639	16	1.9	18	88	11	52	21	3	3	72	1.11
62257--62336	38	2.2	35	82	10	97	30	11	5	53	1.57
65293--65321	14	2.1	14	100	0	58	58	6	27	6	1.50
72071--72227	20	7.8	20	73	6	93	38	25	16	19	1.92
72071--72227	41	3.9	41	70	11	126	38	25	16	19	1.92
72194--72387	20	9.6	20	77	7	187	36	24	19	19	1.95
72194--72387	60	3.2	60	82	2	237	36	24	19	19	1.95
72770--72840	33	2.2	33	94	0	124	11	23	16	47	1.79
72920--72994	20	3.8	20	80	5	89	42	20	24	13	1.87
72978--73034	14	3.7	14	75	20	60	43	22	24	8	1.81
72932--73050	33	3.4	33	88	6	157	44	22	22	10	1.82
72932--73020	19	4.9	19	73	15	80	43	21	23	11	1.84
73046--73128	19	4.7	19	78	15	97	10	21	22	44	1.83
73086--73142	14	3.7	14	75	20	60	8	24	24	42	1.83
73067--73150	33	2.5	33	96	0	159	9	23	21	45	1.81
74848--75316	93	5.1	93	99	0	913	21	12	18	46	1.83
75364--75492	19	7.3	19	75	17	125	44	27	18	8	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75400--75492	33	2.8	32	91	4	150	46	27	18	7	1.76
75364--75492	52	2.5	51	73	12	136	44	27	18	8	1.79
75488--75622	19	7.6	19	75	16	128	11	19	23	45	1.82
75510--75566	14	3.7	14	77	20	60	10	21	22	45	1.82
75493--75585	33	2.8	33	95	0	168	10	20	21	47	1.80
77544--77579	14	2.6	14	95	0	63	33	0	22	44	1.53
77685--77767	19	4.6	19	80	17	113	43	18	24	14	1.87
77802--78154	19	20.1	19	79	16	415	13	20	18	47	1.82
77774--78087	52	5.9	52	84	10	245	14	20	18	47	1.83
77802--78154	71	5.0	71	85	10	478	13	20	18	47	1.82
77758--78126	123	3.0	123	87	8	561	14	21	17	46	1.83
77848--78126	52	5.2	52	86	7	384	14	21	17	46	1.83
80628--80674	24	2.0	24	87	8	69	38	21	14	25	1.92
81357--81546	20	9.5	20	86	2	193	20	17	25	36	1.94
81396--81667	60	4.5	57	76	9	161	20	18	26	35	1.95
81513--81610	20	4.8	20	77	3	79	21	18	23	36	1.95
81513--81669	41	3.9	41	70	14	110	18	17	25	38	1.93
84362--84444	42	1.9	43	95	4	150	49	19	10	20	1.78
87331--87356	5	5.2	5	100	0	52	0	19	57	23	1.40
102175--102204	2	15.0	2	100	0	60	50	0	0	50	1.00
102483--102526	21	2.1	21	86	0	61	38	11	29	20	1.87
102811--102849	5	7.8	5	100	0	78	61	0	0	38	0.96

Tables:   1

The End!