Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002736.1 Hibiscus syriacus cultivar Beakdansim tig00005640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87377

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4119--4180
29
2.1
29
96
0
115
58
17
11
12
1.63
4565--4611
18
2.6
18
93
0
85
14
27
25
31
1.95
16799--16928
60
2.2
60
80
5
147
34
16
18
30
1.93
16812--16943
60
2.2
60
81
5
142
32
16
17
33
1.93
26828--26909
18
4.6
18
89
1
112
37
7
26
28
1.83
27565--27661
37
2.6
37
85
0
113
42
14
13
29
1.84
28057--28118
23
2.6
23
82
10
63
29
1
1
67
1.09
28343--28419
26
3.0
26
76
16
70
29
3
0
66
1.10
28364--28432
26
2.5
29
75
18
74
27
2
0
69
1.02
28513--28569
20
2.9
19
75
14
62
22
8
1
66
1.29
32796--32850
14
3.7
14
80
17
58
81
5
10
1
0.92
32796--32864
19
3.6
19
78
5
68
79
5
11
2
1.01
34462--34896
106
4.1
106
91
0
654
35
24
17
22
1.95
34462--35727
212
6.0
212
85
6
1662
34
24
17
22
1.96
34815--34989
87
2.0
87
92
2
289
34
23
17
24
1.96
34902--35726
106
7.7
106
89
3
1186
33
25
17
22
1.96
36475--36579
37
2.8
37
85
0
138
40
15
12
32
1.84
36996--37043
23
2.0
24
84
11
64
27
2
0
70
0.98
37056--37103
11
4.4
11
79
10
62
33
2
0
64
1.05
37283--37371
42
2.1
42
83
8
110
29
4
0
66
1.11
37231--37371
22
6.8
20
68
15
72
29
4
1
65
1.20
37452--37507
19
2.9
19
75
19
62
23
8
1
66
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43242--43277
17
2.2
17
90
5
56
33
0
16
50
1.46
43824--43882
27
2.3
25
85
8
82
66
5
8
20
1.38
45786--45835
3
16.7
3
91
0
64
60
0
8
32
1.26
48307--48359
22
2.4
22
90
0
79
41
0
20
37
1.53
52077--52108
16
2.1
16
94
5
57
50
3
0
46
1.17
52686--52744
27
2.3
25
88
8
91
64
3
10
22
1.39
55321--55375
16
3.4
16
94
0
92
18
27
16
38
1.92
55604--55650
14
3.7
14
71
26
50
44
0
4
51
1.21
55603--55652
23
2.1
24
96
3
93
48
0
4
48
1.20
58772--58999
102
2.3
99
89
2
339
51
19
8
20
1.72
59171--59273
33
3.1
33
90
5
145
58
13
13
14
1.64
59297--59324
13
2.2
13
100
0
56
53
7
25
14
1.66
61014--61061
20
2.3
22
82
13
66
27
2
27
43
1.66
61192--61250
13
4.5
13
72
19
59
38
11
6
42
1.68
61192--61260
18
3.6
18
70
21
59
39
11
7
42
1.69
61183--61283
40
2.5
41
96
3
186
40
12
6
39
1.70
61499--61743
77
3.2
75
78
12
193
42
4
4
48
1.42
61624--61659
15
2.4
15
95
0
63
41
2
5
50
1.40
61624--61908
13
21.5
13
67
21
103
41
3
5
49
1.44
61497--61682
2
95.0
2
70
19
117
45
4
3
47
1.38
61704--61780
28
2.9
26
81
7
91
41
7
6
44
1.59
61763--61842
18
4.3
18
77
16
83
43
2
5
48
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62594--62733
64
2.2
64
87
2
201
27
27
18
25
1.98
62880--62920
12
3.4
12
86
10
57
17
9
0
73
1.09
67020--67063
22
2.0
22
86
8
63
47
22
0
29
1.51
69222--69282
24
2.5
24
97
0
113
45
16
9
27
1.79
71748--71789
17
2.5
17
81
11
59
30
23
23
21
1.99
73319--73360
14
2.9
15
79
13
52
30
0
2
66
1.04
75502--75530
2
14.5
2
100
0
58
48
0
0
51
1.00
82088--82217
45
3.0
44
86
10
178
20
22
27
30
1.98
82195--82286
39
2.4
39
81
1
105
16
23
29
30
1.96
82665--82796
69
1.9
68
84
7
178
48
5
11
34
1.62
82885--82911
14
1.9
14
100
0
54
18
7
14
59
1.58
83066--83095
15
2.0
15
93
0
51
10
33
6
50
1.62
84034--84084
24
2.2
23
82
10
59
39
3
23
33
1.73
84108--84141
17
1.9
18
88
5
52
61
0
2
35
1.11

Tables:   1

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