genome.fa.s2738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002738.1 Hibiscus syriacus cultivar Beakdansim tig00005647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74266

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889--971	2	41.5	2	100	0	166	50	0	0	49	1.00
6712--6778	30	2.2	31	91	2	109	20	26	14	37	1.92
9052--9095	22	2.2	20	84	15	56	27	29	11	31	1.91
11178--11237	23	2.6	23	75	0	75	21	26	23	28	1.99
18140--18199	23	2.6	22	87	10	84	18	25	28	28	1.98
18140--18207	23	3.0	23	86	4	75	19	22	26	32	1.97
22500--22628	59	2.2	59	84	0	159	27	18	25	27	1.98
22687--22728	20	2.1	20	90	0	66	16	9	26	47	1.77
22729--22967	44	5.4	44	93	2	399	39	6	22	32	1.79
22755--22827	25	3.2	25	60	28	61	41	8	20	30	1.81
22757--22828	24	3.2	24	62	34	59	40	8	20	30	1.82
22883--22956	24	3.2	24	62	27	61	37	8	22	31	1.84
24820--24863	23	2.0	22	86	4	61	27	25	29	18	1.98
24909--24959	21	2.7	18	82	11	57	23	17	11	47	1.81
25793--25934	36	3.7	36	76	15	122	47	3	4	43	1.41
25879--26010	25	5.1	25	87	6	167	47	3	7	40	1.50
25863--25894	2	16.5	2	93	6	57	53	0	0	46	1.00
26016--26130	29	3.9	29	69	14	83	45	2	4	47	1.36
26063--26100	2	19.5	2	94	5	69	52	0	0	47	1.00
26140--26180	20	2.0	20	85	0	55	43	2	12	41	1.55
26753--26778	8	3.2	8	100	0	52	76	11	0	11	1.01
27421--27496	32	2.7	26	76	23	73	14	7	2	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27424--27487	32	2.0	33	90	9	105	15	9	3	71	1.24
27480--27528	25	2.0	24	84	4	62	28	4	0	67	1.09
28632--28671	20	2.0	20	85	5	53	50	7	7	35	1.59
28932--28980	23	2.2	22	82	10	55	44	4	0	51	1.20
28943--29020	23	3.3	23	77	13	63	58	0	0	41	0.98
28979--29027	15	3.4	15	78	15	59	63	0	0	36	0.95
29086--29126	2	21.0	2	95	5	75	51	0	0	48	1.00
29085--29131	8	6.3	7	88	11	51	53	2	0	44	1.12
29428--29484	25	2.3	24	85	5	87	35	14	5	45	1.67
29853--29911	25	2.4	25	82	0	73	40	15	5	38	1.69
35519--35560	20	2.0	20	90	4	66	52	0	2	45	1.13
35536--35566	15	2.1	15	93	0	53	41	0	3	54	1.16
35616--35640	13	1.9	13	100	0	50	32	0	8	60	1.26
37625--37806	75	2.4	75	83	3	206	28	6	14	51	1.67
38022--38073	21	2.5	21	100	0	104	32	25	19	23	1.97
38103--38207	19	5.2	19	80	13	111	33	6	28	31	1.83
38092--38207	63	1.9	60	87	5	169	31	7	28	31	1.85
38602--38750	19	7.8	19	76	7	115	36	20	20	22	1.95
38602--38750	54	2.6	56	75	8	158	36	20	20	22	1.95
39015--39082	33	2.1	33	97	0	127	29	13	16	41	1.86
45334--45414	26	3.2	25	74	19	94	39	13	3	43	1.62
55576--55628	22	2.5	21	84	3	61	54	0	1	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55565--55637	24	3.2	24	73	13	64	47	0	1	50	1.09
55620--55702	29	2.8	29	76	7	78	42	3	1	53	1.26
55625--55714	29	3.1	29	76	6	76	44	3	1	51	1.25
55812--55857	17	2.6	18	80	10	51	54	2	2	41	1.25
55808--55872	20	3.2	20	79	14	62	58	1	1	38	1.17
55833--55872	20	1.9	22	90	10	66	57	0	2	40	1.12
55805--55873	21	3.4	21	80	11	65	55	1	1	42	1.18
55883--55946	22	3.0	22	73	22	57	51	0	1	46	1.10
56596--56651	2	28.0	2	100	0	112	50	50	0	0	1.00
56651--56678	2	14.0	2	100	0	56	50	0	0	50	1.00
57425--57531	56	1.9	57	86	9	157	31	21	17	28	1.96
58315--58350	14	2.6	14	86	0	54	30	13	22	33	1.93
60624--60652	14	2.1	14	100	0	58	41	13	6	37	1.72
67511--67573	13	4.5	13	74	18	63	17	44	20	17	1.87
67507--67573	31	2.2	31	88	0	98	17	46	19	16	1.85
67563--67596	15	2.1	17	89	10	54	14	35	23	26	1.94
68873--68907	18	1.9	18	88	0	52	54	0	17	28	1.43
69886--69952	12	5.7	11	76	11	53	17	13	17	50	1.77
69883--69954	24	3.0	23	86	6	99	19	12	18	50	1.78
72079--72135	29	2.0	29	86	6	80	42	0	1	56	1.10
73862--73920	26	2.3	27	94	5	104	40	32	6	20	1.78
73862--73930	26	2.6	27	86	8	72	44	30	7	17	1.75

Tables:   1

The End!