genome.fa.s2739.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002739.1 Hibiscus syriacus cultivar Beakdansim tig00005648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90991

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1639--1686	23	2.1	23	96	0	87	25	25	12	37	1.91
5174--5955	85	9.2	86	83	4	901	35	20	19	24	1.95
5174--6370	171	7.2	171	82	7	1323	35	20	18	25	1.95
5894--6024	69	1.9	69	91	0	217	37	22	16	22	1.94
5473--6191	238	3.0	238	81	8	830	35	21	18	24	1.96
5963--6386	83	5.0	85	81	5	443	35	19	18	26	1.95
5963--6386	167	2.5	167	85	4	532	35	19	18	26	1.95
7130--7175	12	4.1	11	81	13	58	45	2	2	50	1.26
8581--8632	24	2.2	23	86	3	68	25	7	1	65	1.30
12503--12547	21	2.2	21	84	4	56	51	0	11	37	1.38
23154--23183	9	3.3	9	95	0	51	20	0	0	80	0.72
26437--26465	15	1.9	15	100	0	58	75	13	3	6	1.13
27361--27399	20	2.0	20	85	10	53	25	28	23	23	1.99
28169--28421	20	12.5	20	78	7	107	39	18	21	19	1.93
28294--28421	40	3.2	40	88	0	193	35	17	24	22	1.95
28294--28421	60	2.1	60	94	0	220	35	17	24	22	1.95
28488--28548	6	10.8	6	98	1	94	27	54	18	0	1.44
29238--29275	6	6.5	6	96	3	69	0	15	52	31	1.43
29353--29396	20	2.2	20	91	0	70	11	18	15	54	1.70
29383--29700	20	15.6	20	78	7	183	18	22	19	38	1.93
29385--29596	40	5.2	40	84	5	244	20	25	17	36	1.94
29385--29596	83	2.6	83	87	2	286	20	25	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29650--29700	19	2.6	20	90	3	77	15	17	23	43	1.88
34982--35019	20	1.9	20	94	0	67	36	10	31	21	1.87
35171--35244	37	2.0	36	84	7	96	48	4	0	47	1.20
49949--50105	39	4.1	39	78	6	151	43	3	7	45	1.49
49990--50140	71	2.1	71	86	5	203	44	2	7	45	1.47
49990--50140	36	4.1	36	79	7	153	44	2	7	45	1.47
50123--50157	18	1.9	18	88	0	52	51	0	8	40	1.33
50036--50324	104	2.8	99	76	12	287	44	3	7	44	1.49
50067--50238	69	2.5	65	77	19	170	44	2	8	44	1.47
50150--50245	36	2.6	36	80	9	122	44	5	8	41	1.57
50176--50304	66	2.0	66	84	4	172	44	4	7	42	1.53
50212--50267	29	1.9	29	85	0	76	46	7	7	39	1.59
50241--50323	35	2.3	35	79	6	85	45	2	6	45	1.41
50175--50310	65	2.1	65	82	5	168	44	4	7	43	1.52
50334--50375	22	2.0	22	85	4	59	19	4	0	76	0.96
50345--50402	25	2.3	26	85	8	75	18	3	1	75	1.03
50333--50409	12	6.2	12	75	20	61	18	5	1	75	1.06
51633--51730	13	7.1	14	70	12	60	17	8	1	73	1.13
53844--53899	24	2.4	24	93	3	96	48	5	33	12	1.64
53843--53910	24	3.0	21	80	14	73	44	4	33	17	1.69
55433--55621	95	2.0	95	87	2	272	31	17	19	31	1.95
56764--57412	85	7.8	84	77	6	590	29	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56839--57439	165	3.6	164	83	5	660	29	23	20	26	1.99
56786--57370	250	2.4	248	85	2	764	29	24	21	24	1.99
57857--58047	37	5.1	38	79	5	158	46	3	7	42	1.50
57888--58141	36	7.1	36	75	13	215	46	3	7	42	1.50
57955--58228	101	2.7	99	76	14	263	44	3	7	44	1.49
58114--58170	29	2.0	29	89	0	87	42	5	7	45	1.53
58078--58214	67	2.1	66	83	6	172	43	3	5	46	1.45
58249--58298	21	2.3	22	86	10	68	22	4	0	74	0.99
58249--58310	21	3.0	20	80	15	65	19	6	0	74	1.03
60647--60671	2	12.5	2	100	0	50	52	0	0	48	1.00
65338--65382	2	23.0	2	95	4	83	48	0	0	51	1.00
65338--65414	10	7.3	10	82	10	73	42	0	1	55	1.07
65832--65938	42	2.6	41	77	2	115	30	22	19	27	1.98
65998--66372	176	2.1	176	90	0	588	33	19	17	30	1.95
66236--66342	42	2.6	41	83	2	142	31	22	19	26	1.98
66174--66815	237	2.7	237	88	0	944	34	18	15	31	1.92

Tables:   1

The End!