genome.fa.s274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000274.1 Hibiscus syriacus cultivar Beakdansim tig00000508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91748

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468--514	14	3.3	14	80	14	51	38	2	2	57	1.23
476--539	28	2.2	29	86	2	85	43	3	3	50	1.33
476--564	28	3.1	27	75	16	83	43	2	2	51	1.26
648--723	29	2.5	31	77	16	88	52	0	1	46	1.08
9807--9872	22	3.3	20	80	15	75	34	15	22	27	1.94
10407--10627	34	5.9	34	69	21	147	36	11	24	27	1.90
10352--10671	78	4.1	79	90	1	500	37	11	24	26	1.89
10597--10713	45	2.6	46	81	6	114	38	11	21	29	1.88
14042--14093	20	2.6	20	96	0	95	32	21	9	36	1.86
19990--20023	17	2.0	17	88	0	50	41	2	11	44	1.56
20028--20087	30	2.0	30	90	6	95	33	15	26	25	1.95
20098--20150	20	2.7	20	78	0	52	15	22	35	26	1.93
26389--26426	20	1.9	20	88	0	58	50	21	0	28	1.49
26570--26615	22	2.0	22	84	12	58	17	19	4	58	1.55
26571--26624	22	2.5	21	80	14	56	16	20	3	59	1.52
28668--28754	44	2.0	44	86	4	122	45	10	6	36	1.65
32183--32227	12	3.7	12	83	16	65	26	15	42	15	1.87
32249--32274	13	2.0	13	100	0	52	15	30	38	15	1.88
32296--32375	29	2.8	29	92	3	126	15	31	32	21	1.94
32554--32605	25	2.1	25	100	0	104	26	11	34	26	1.91
32618--32663	23	2.0	23	91	0	74	47	4	34	13	1.62
32618--32678	23	2.6	23	81	5	59	50	6	32	9	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32668--32720	21	2.5	21	96	0	97	62	0	35	1	1.06
32666--32697	17	1.9	16	93	6	55	62	0	37	0	0.95
33178--33224	16	3.0	16	84	9	53	29	0	10	59	1.31
33199--33229	15	2.1	14	94	5	53	38	0	6	54	1.26
35378--35410	17	1.9	17	93	0	57	45	12	6	36	1.66
35395--35463	22	3.0	22	73	19	77	47	7	4	40	1.51
35599--35685	38	2.4	37	81	9	99	51	4	2	41	1.35
35615--35842	14	17.1	13	73	18	120	46	8	2	42	1.47
35615--35842	26	9.2	26	73	12	174	46	8	2	42	1.47
35631--35900	124	2.2	123	92	2	445	45	9	1	42	1.46
38743--38803	26	2.4	24	76	15	59	42	1	6	49	1.38
39169--39195	14	1.9	14	100	0	54	74	14	3	7	1.18
39166--39198	17	1.9	17	88	11	50	72	15	3	9	1.21
39597--39645	21	2.3	21	78	3	53	48	18	2	30	1.59
40033--40100	35	1.9	35	100	0	136	26	14	29	29	1.95
40140--40164	12	2.1	12	100	0	50	24	60	0	16	1.36
40158--40228	29	2.4	29	100	0	142	18	35	25	21	1.95
40391--40455	31	2.1	31	97	0	121	35	30	29	4	1.78
41877--41904	2	14.0	2	100	0	56	50	0	0	50	1.00
43579--43671	25	3.4	25	75	20	80	37	3	7	51	1.46
44714--44869	2	83.5	2	69	21	108	41	1	2	54	1.22
44714--44871	33	4.8	36	72	22	123	41	1	2	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44714--44865	47	3.1	51	79	15	153	41	1	2	54	1.22
44712--44870	52	3.0	53	80	13	163	40	1	2	55	1.21
45851--45888	14	2.7	14	95	0	67	42	21	5	31	1.75
45923--45964	18	2.4	18	88	4	59	26	11	0	61	1.30
46777--46831	2	27.5	2	100	0	110	50	49	0	0	1.00
46831--46859	2	14.5	2	100	0	58	51	0	0	48	1.00
47205--47253	19	2.4	20	83	13	64	26	30	16	26	1.97
47275--47328	21	2.5	22	82	17	69	27	24	16	31	1.96
48938--48992	22	2.7	19	71	17	56	30	20	29	20	1.97
49422--49727	45	6.8	45	84	3	348	40	10	19	29	1.85
49422--49726	135	2.3	134	83	4	389	40	10	19	29	1.85
58961--59020	31	1.9	31	96	0	111	30	25	13	31	1.93
61768--61799	11	2.9	11	100	0	64	28	9	43	18	1.81
69872--69964	20	4.7	20	94	2	161	31	24	22	21	1.98
69879--69983	40	2.7	40	86	4	106	34	24	20	20	1.96
70909--70975	31	2.3	29	76	16	68	10	20	8	59	1.57

Tables:   1

The End!