genome.fa.s2743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002743.1 Hibiscus syriacus cultivar Beakdansim tig00005653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65805

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8359--8411	26	2.0	26	100	0	106	35	11	22	30	1.89
14651--15027	194	1.9	194	91	0	610	34	13	22	29	1.92
15828--15865	18	2.1	18	85	9	51	5	5	10	78	1.06
18274--18424	74	2.0	74	89	2	232	33	11	15	39	1.85
19956--19994	21	1.9	20	85	15	53	38	7	23	30	1.83
20250--20342	21	4.5	21	78	4	100	39	18	24	17	1.91
20250--20342	41	2.3	41	100	0	186	39	18	24	17	1.91
20269--20403	41	3.3	41	85	4	139	38	20	20	20	1.94
20331--20424	20	4.7	20	77	2	89	34	23	17	25	1.96
20939--21028	38	2.3	39	94	1	155	50	22	17	10	1.76
20943--21028	19	4.5	19	92	1	136	50	23	17	9	1.75
21024--21208	19	10.1	19	78	14	183	11	22	22	43	1.86
21096--21183	33	2.6	33	92	1	140	11	25	25	38	1.89
21151--21208	20	2.9	20	80	10	64	13	24	18	43	1.87
23208--23291	42	2.0	42	88	0	123	20	39	16	23	1.92
23264--23330	21	3.2	21	66	6	55	23	35	20	19	1.95
24686--24721	14	2.6	14	95	0	63	30	0	25	44	1.54
24828--24894	19	3.8	19	72	23	65	44	20	22	11	1.84
24903--25029	33	3.9	32	86	8	184	14	23	19	42	1.88
24899--25029	19	7.7	19	65	23	85	13	23	19	42	1.87
24896--25028	66	2.0	66	95	0	239	15	23	19	41	1.90
27322--27346	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27521--27574	24	2.2	24	90	0	81	40	20	14	24	1.90
28712--28757	19	2.4	19	96	0	83	17	21	13	47	1.81
30644--30699	20	2.9	19	84	5	85	35	21	25	17	1.95
30625--30741	39	3.2	37	70	19	102	41	23	19	15	1.89
30641--30740	19	5.5	19	73	14	86	43	21	21	15	1.88
30699--30756	14	3.9	14	75	16	62	48	24	15	12	1.79
30683--30761	32	2.4	33	93	2	133	46	22	17	12	1.82
30768--30901	50	2.6	51	89	4	198	13	21	21	43	1.87
30866--30929	20	3.2	20	93	2	103	18	26	20	34	1.96
30866--30940	20	3.8	20	91	1	98	17	25	22	34	1.96
31413--31457	18	2.5	18	88	0	72	13	15	44	26	1.83
32777--32814	20	1.9	20	88	0	58	50	21	15	13	1.78
33079--33122	22	2.0	22	95	0	79	18	15	45	20	1.85
33310--33362	20	2.7	20	87	0	79	28	18	24	28	1.98
33290--33404	20	5.7	20	74	5	70	25	17	21	35	1.95
33330--33407	41	1.9	41	83	0	102	23	16	20	39	1.92
33393--33485	20	4.5	21	78	4	100	17	24	18	39	1.91
33393--33485	41	2.3	41	100	0	150	17	24	18	39	1.91
36300--36338	15	2.9	13	85	14	53	58	0	0	41	0.98
36302--36340	14	2.7	15	88	8	62	56	0	0	43	0.99
37613--37669	23	2.4	25	81	18	70	24	1	3	70	1.13
37643--37679	19	1.9	19	88	0	56	24	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42005--42060	2	28.0	2	100	0	112	50	0	0	50	1.00
42241--42312	24	3.0	24	83	2	92	50	18	11	20	1.77
42245--42313	12	5.8	12	75	10	52	49	18	13	18	1.79
43434--43468	18	1.9	18	88	0	52	28	17	0	54	1.43
44766--44806	8	5.5	8	77	16	52	21	21	41	14	1.89
44772--44797	13	2.0	13	100	0	52	15	23	46	15	1.83
44766--44808	21	2.0	21	95	0	77	20	20	44	13	1.86
48783--48842	31	1.9	31	83	6	77	70	3	3	23	1.18
48798--48950	49	3.1	51	79	11	190	62	2	5	30	1.31
48879--48924	20	2.3	19	81	11	56	63	2	4	30	1.26
49768--49806	15	2.6	15	100	0	78	5	25	0	69	1.09
50601--50665	33	2.0	33	93	0	112	24	23	18	33	1.96
50792--50867	36	2.1	35	82	2	89	34	14	14	36	1.87
50864--50889	2	13.0	2	100	0	52	50	0	0	50	1.00
50890--51043	36	4.3	36	75	9	161	31	12	16	40	1.85
60924--61178	19	13.2	19	73	8	183	28	15	18	38	1.91
60909--61165	59	4.4	59	78	6	222	28	15	19	37	1.92
60909--61203	39	7.6	38	75	9	211	29	14	18	37	1.91
60962--61203	78	3.1	77	79	9	242	29	15	17	37	1.91

Tables:   1

The End!