genome.fa.s2744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002744.1 Hibiscus syriacus cultivar Beakdansim tig00005654_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69943

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364--405	6	7.0	6	84	15	52	28	2	0	69	1.01
365--404	13	3.2	13	86	6	57	25	2	0	72	0.97
2490--2522	2	16.5	2	100	0	66	48	0	0	51	1.00
9048--9180	44	3.0	45	92	1	214	20	22	27	30	1.98
9048--9194	45	3.3	45	90	2	217	19	23	26	30	1.98
9635--9767	69	1.9	69	87	3	196	48	5	11	35	1.62
9856--9882	14	1.9	14	100	0	54	18	7	14	59	1.58
10037--10066	15	2.0	15	93	0	51	10	33	6	50	1.62
11018--11070	25	2.2	24	86	3	70	37	3	24	33	1.74
17308--17339	17	1.9	16	93	6	55	53	6	3	37	1.42
18416--18480	18	3.6	19	83	10	82	32	6	32	29	1.82
19348--19392	20	2.2	20	100	0	90	35	17	17	28	1.93
18981--19986	198	5.1	198	80	11	1119	33	13	13	39	1.83
20266--21014	177	4.1	177	78	10	810	30	15	13	40	1.85
20621--20659	20	2.0	20	94	0	69	30	10	17	41	1.83
20184--21211	374	2.8	373	89	1	1508	31	15	12	40	1.85
20444--20836	197	2.0	197	94	0	687	30	14	13	40	1.85
20818--21231	197	2.1	197	90	1	652	30	15	13	40	1.86
21193--21306	20	5.7	20	75	2	93	25	14	17	42	1.86
24694--24718	13	1.9	13	100	0	50	12	64	24	0	1.27
25496--25562	3	22.0	3	82	8	82	59	0	0	40	0.97
25498--25574	15	5.5	15	75	18	69	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25496--25574	9	8.3	10	75	18	62	62	0	0	37	0.96
25828--26026	96	2.1	96	93	0	335	28	17	15	39	1.90
25924--27255	116	11.7	113	88	3	1770	30	19	13	37	1.89
25924--27252	341	3.9	342	96	1	2312	29	19	13	37	1.89
25795--27252	457	3.2	451	86	4	2019	30	19	13	37	1.90
27656--27710	22	2.5	22	87	0	83	36	14	14	34	1.87
30267--30506	92	2.6	92	93	0	399	35	22	14	27	1.93
32784--32841	22	2.7	21	80	15	73	1	12	3	82	0.86
32784--32859	10	7.5	10	71	14	57	1	14	2	81	0.86
32807--32868	30	2.1	29	82	8	72	1	19	0	79	0.82
32784--32858	22	3.4	21	73	21	64	1	14	2	81	0.87
32807--32865	19	3.0	20	76	20	61	1	20	0	77	0.85
32783--32886	47	2.3	45	79	14	108	2	15	4	76	1.06
32789--32868	17	4.4	19	75	13	78	1	17	2	78	0.92
32854--32897	22	2.0	22	95	0	79	4	15	13	65	1.41
36112--36155	14	3.1	14	83	6	61	54	2	15	27	1.53
37816--37874	30	1.9	32	82	6	77	61	1	6	30	1.32
37879--37918	15	2.7	15	88	3	64	72	0	0	27	0.85
37879--37916	7	5.3	7	85	14	51	73	0	0	26	0.83
40070--40133	3	21.0	3	81	9	76	59	0	0	40	0.97
40072--40149	15	5.5	15	73	20	62	62	0	0	37	0.95
40070--40137	18	4.0	17	85	11	86	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49959--49995	18	2.1	17	90	5	56	16	29	0	54	1.43
50756--50949	103	1.9	103	82	9	243	36	14	19	28	1.92
59621--59675	20	2.7	21	85	5	76	30	18	20	30	1.96
59662--59733	30	2.4	30	97	0	135	30	29	15	25	1.96
59779--59838	22	2.7	23	84	7	88	28	20	20	31	1.97
69584--69642	28	2.1	28	93	6	102	47	10	13	28	1.75

Tables:   1

The End!