genome.fa.s2746.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002746.1 Hibiscus syriacus cultivar Beakdansim tig00005657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188673

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10307--10415	30	3.6	30	82	7	121	45	5	5	43	1.50
31671--31710	20	2.0	20	95	0	71	27	20	25	27	1.99
38682--38708	3	9.0	3	100	0	54	33	0	0	66	0.92
39076--39156	29	2.7	30	85	7	112	40	7	7	44	1.60
39071--39172	29	3.5	29	75	11	100	40	8	7	43	1.65
59480--59654	43	4.1	43	88	2	246	27	22	22	27	1.99
59499--59688	86	2.2	87	84	3	251	26	20	23	30	1.99
59816--59874	21	2.8	21	84	0	73	55	20	5	18	1.61
63484--64027	83	6.6	83	85	6	628	32	18	21	27	1.97
63484--64027	125	4.4	124	87	4	699	32	18	21	27	1.97
63484--63979	208	2.4	208	95	0	877	32	18	22	27	1.97
74617--74661	22	2.0	22	83	8	56	31	15	22	31	1.95
75281--75323	21	2.0	21	100	0	86	39	0	13	46	1.44
75292--75377	35	2.5	35	84	0	100	37	1	20	40	1.61
75508--75565	29	2.0	29	86	6	82	27	8	29	34	1.87
79033--79069	19	2.0	19	94	5	67	48	10	21	18	1.78
79017--80121	558	2.0	558	89	3	1724	40	8	13	36	1.76
80134--80324	105	1.8	104	84	3	258	30	31	17	19	1.95
86570--86596	14	1.9	14	100	0	54	22	7	0	70	1.12
89807--89845	20	2.0	20	84	0	51	25	23	10	41	1.86
94343--94619	139	2.0	138	98	0	536	33	21	18	26	1.96
96457--96532	18	4.2	18	88	5	100	47	13	5	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96457--96532	35	2.1	37	85	7	102	47	13	5	34	1.65
98472--98532	18	3.4	18	77	6	70	42	9	34	13	1.77
113338--113387	21	2.4	21	79	0	64	38	8	14	40	1.75
116801--117031	18	13.3	18	82	7	203	0	37	10	50	1.43
116801--117052	51	4.9	51	73	18	184	0	37	10	51	1.43
116839--117053	18	12.7	16	84	6	141	0	36	11	50	1.45
117003--117065	30	2.1	30	82	5	74	1	38	12	47	1.51
118671--118710	16	2.5	15	80	11	53	35	15	27	22	1.94
128450--128582	41	3.2	41	85	4	185	19	16	23	40	1.91
128490--128560	22	3.3	22	78	4	90	18	15	26	39	1.90
133675--133733	31	1.9	31	86	3	84	28	8	6	55	1.55
146288--146351	24	2.7	24	97	0	119	18	7	35	37	1.80
146759--146807	2	24.5	2	100	0	98	48	0	0	51	1.00
147421--147454	2	17.0	2	100	0	68	50	0	0	50	1.00
147812--147848	18	2.1	18	100	0	74	40	10	5	43	1.63
147816--147858	18	2.3	18	88	4	59	46	9	2	41	1.48
148010--148082	21	3.5	21	94	0	119	32	21	21	23	1.98
148091--148207	21	5.6	21	76	8	94	23	18	25	32	1.97
148157--148224	21	3.2	21	70	15	68	22	17	20	39	1.92
148097--148232	42	3.2	42	83	4	150	22	17	24	35	1.95
148170--148236	19	3.3	19	71	15	62	25	17	20	35	1.95
148895--149021	61	2.1	61	95	0	227	34	22	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148952--149097	42	3.5	42	92	0	247	36	23	19	20	1.95
148895--149122	21	11.0	21	74	13	179	35	23	19	21	1.96
148952--149122	42	4.1	41	88	3	218	35	23	19	20	1.96
148923--149122	84	2.4	83	86	8	289	35	24	19	21	1.96
155569--155601	2	16.5	2	100	0	66	48	0	0	51	1.00
160967--161008	14	2.9	15	79	13	52	66	2	0	30	1.04
181359--181427	33	2.1	33	84	10	88	27	7	26	39	1.82
182538--182590	27	2.0	27	88	0	79	41	1	1	54	1.22
182604--182831	30	7.9	28	72	21	145	56	1	6	35	1.35
182753--182840	26	3.4	25	82	16	94	56	2	3	37	1.28
182753--182827	26	2.9	27	84	13	95	57	1	4	37	1.26
186755--187013	133	1.9	134	87	3	380	35	13	10	40	1.78
187166--187208	20	2.1	21	82	4	52	41	4	27	25	1.75
187350--187382	16	2.1	16	94	0	57	60	18	9	12	1.57
187731--187815	14	6.1	14	92	0	134	55	14	15	15	1.70

Tables:   1

The End!