genome.fa.s2748.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002748.1 Hibiscus syriacus cultivar Beakdansim tig00005659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127885

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1185	193	6.1	198	92	6	1965	31	17	15	36	1.91
1--1185	387	3.1	392	92	5	2008	31	17	15	36	1.91
1300--1347	18	2.7	18	81	12	62	58	10	2	29	1.43
3119--3184	33	2.0	33	87	0	96	24	48	0	27	1.51
3218--3257	21	2.0	21	85	9	57	15	30	17	37	1.90
5485--5527	20	2.3	18	85	14	61	20	16	11	51	1.75
5490--5536	20	2.4	19	82	10	67	19	17	10	53	1.72
5658--5703	20	2.3	20	89	10	76	17	17	10	54	1.70
9362--9419	22	2.7	22	81	2	64	65	1	1	31	1.13
10455--10619	80	2.1	80	97	0	312	33	20	15	30	1.94
10895--11272	191	2.0	193	88	2	564	25	23	23	28	1.99
12381--12416	2	18.0	2	100	0	72	50	0	0	50	1.00
18283--18322	19	2.1	19	90	0	62	42	0	5	52	1.23
21352--21405	16	3.4	16	100	0	108	22	11	31	35	1.89
24330--24465	67	2.0	67	92	0	227	29	24	15	30	1.95
27383--27439	28	2.0	28	89	0	87	31	24	22	21	1.98
28665--28713	10	5.1	10	81	18	52	65	0	2	32	1.04
28680--28721	16	2.6	16	88	0	57	61	0	0	38	0.96
28679--28711	13	2.5	13	90	0	57	66	0	0	33	0.92
29773--29880	34	3.2	34	63	19	91	26	14	24	34	1.94
29729--30455	66	11.4	66	71	13	491	26	15	24	33	1.95
29639--30472	124	6.6	124	77	8	810	26	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30247--30417	32	5.2	32	64	15	89	22	16	28	32	1.96
30268--30449	34	5.5	34	67	12	135	21	17	26	34	1.95
33483--33692	65	3.3	63	80	11	212	30	23	19	27	1.98
34935--34979	21	2.1	21	91	0	72	33	28	22	15	1.95
35406--35462	20	2.7	22	78	15	66	43	5	14	36	1.67
35990--36176	31	6.0	31	93	1	313	20	18	21	39	1.93
36955--37009	2	27.5	2	100	0	110	50	0	0	49	1.00
39511--39555	21	2.1	21	91	0	72	33	28	22	15	1.95
39983--40039	20	2.7	22	78	15	66	43	5	14	36	1.67
40569--40724	31	5.0	31	95	1	269	19	19	22	38	1.93
41595--41619	2	12.5	2	100	0	50	52	0	0	48	1.00
43753--43830	36	2.2	36	95	0	138	28	17	7	46	1.76
46575--46681	24	4.5	24	72	0	97	47	16	13	22	1.81
46575--46683	48	2.3	48	80	0	137	47	16	13	22	1.81
49230--49288	23	2.6	22	74	10	57	13	18	45	22	1.84
51351--51457	24	4.5	24	72	0	97	47	16	13	22	1.81
51351--51459	48	2.3	48	80	0	137	47	16	13	22	1.81
53316--53388	36	2.0	36	100	0	146	28	21	8	41	1.82
59932--59984	19	2.8	19	100	0	106	30	32	16	20	1.95
61757--61788	16	2.1	15	94	5	55	53	6	6	34	1.51
61921--61945	12	2.1	12	100	0	50	60	0	0	40	0.97
63252--63305	19	2.9	19	81	13	67	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63267--63291	13	1.9	13	100	0	50	64	0	0	36	0.94
66320--66402	29	2.8	29	88	1	121	40	12	14	32	1.83
69653--69720	23	3.0	23	86	0	82	20	27	25	26	1.99
76398--76461	23	2.8	23	88	7	94	20	26	25	28	1.99
76917--76960	2	22.0	2	100	0	88	50	0	0	50	1.00
80402--81252	419	2.0	425	93	2	1480	21	21	18	37	1.94
81622--81810	22	8.6	22	88	2	272	50	10	0	39	1.37
81775--81836	12	5.6	12	69	16	53	48	3	1	46	1.28
86964--87064	47	2.1	47	98	0	193	24	13	18	42	1.87
100260--100309	16	3.1	16	97	0	91	42	6	28	24	1.78
105617--105674	23	2.6	23	78	5	66	41	8	18	31	1.81
105616--105833	87	2.6	85	86	7	325	42	9	14	33	1.78
105887--105959	14	5.3	14	69	8	51	47	1	1	49	1.18
105887--105955	28	2.5	28	74	6	70	49	1	1	47	1.19
105974--106042	24	2.9	25	79	18	76	46	1	0	52	1.09
106340--106899	92	6.1	92	91	2	865	44	13	12	30	1.80
110021--110736	184	3.9	184	95	0	1301	33	16	13	36	1.88
112101--112155	3	18.3	3	88	0	83	29	32	1	36	1.68
112101--112168	12	5.7	12	89	0	91	26	32	2	38	1.71
114184--114236	21	2.5	21	93	0	88	30	20	18	30	1.97
113985--114435	220	2.0	220	91	0	724	30	17	14	37	1.89
113656--114858	200	5.9	200	88	5	1772	31	17	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115090--115136	19	2.5	19	92	0	76	55	12	2	29	1.49
116702--116754	12	4.5	12	78	4	54	3	39	0	56	1.17
116718--116761	15	2.9	16	72	27	51	2	43	0	54	1.12
116691--116757	35	1.9	34	93	3	116	4	40	0	55	1.20
117063--117124	21	3.0	21	87	0	88	17	27	11	43	1.83
118151--118209	28	2.1	27	87	9	84	25	11	15	47	1.79
119362--119833	181	2.6	182	91	1	759	26	16	14	42	1.87
120740--120783	23	1.9	23	86	9	63	70	0	0	29	0.88
121042--121092	2	25.5	2	95	0	93	49	1	0	49	1.12
121169--121227	29	2.0	30	83	9	77	61	3	6	28	1.38
122388--122456	23	3.0	23	76	0	75	33	26	23	17	1.96
122920--122984	2	32.5	2	100	0	130	49	0	0	50	1.00
124091--124140	19	2.6	19	100	0	100	22	30	18	30	1.97
125891--125935	3	14.7	3	86	4	63	66	0	2	31	1.04
126177--126299	45	2.8	45	94	1	212	35	18	21	24	1.95

Tables:   1

The End!