genome.fa.s275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000275.1 Hibiscus syriacus cultivar Beakdansim tig00000509_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95169

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811--845	18	1.9	18	88	0	52	62	0	0	37	0.95
1674--1764	45	2.0	46	93	4	157	42	7	7	41	1.62
3210--3730	43	12.3	43	77	10	484	31	20	27	20	1.97
3173--3717	125	4.3	125	81	8	665	31	20	27	20	1.98
3258--3730	82	5.7	82	78	8	427	31	20	27	20	1.98
3258--3730	251	1.9	250	88	1	714	31	20	27	20	1.98
5128--5204	27	2.8	26	86	7	109	23	12	15	48	1.80
5953--6001	17	2.9	17	87	0	71	30	30	26	12	1.92
7313--7426	42	2.7	42	84	0	138	21	9	21	47	1.79
10396--10471	15	5.1	15	77	0	53	15	35	19	28	1.93
23200--23239	2	20.0	2	100	0	80	50	0	0	50	1.00
27124--27202	38	2.1	38	95	0	140	25	24	21	29	1.99
28525--28559	17	2.1	17	94	0	61	54	25	14	5	1.62
37805--37895	46	2.0	46	97	0	173	41	13	5	39	1.67
54108--54355	130	1.9	130	92	0	415	35	14	13	36	1.85
54686--54748	28	2.3	27	78	8	63	46	1	3	49	1.27
54828--54861	16	2.0	18	88	11	54	64	5	2	26	1.30
54983--55025	21	2.0	21	100	0	86	39	0	13	46	1.44
54994--55079	35	2.5	35	84	0	100	37	1	20	40	1.61
55210--55267	29	2.0	29	86	6	82	27	8	29	34	1.87
55960--56025	29	2.2	30	83	2	89	19	13	18	48	1.81
59637--59731	43	2.2	43	96	0	172	36	35	10	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59847--59965	24	5.0	24	84	4	159	39	20	14	26	1.90
59847--59988	72	2.0	71	84	6	189	42	19	13	25	1.87
62413--62447	7	4.9	7	96	3	61	40	28	17	14	1.88
62442--62496	13	4.2	13	90	0	83	18	20	43	18	1.88
62445--62506	26	2.5	25	84	7	83	16	19	46	17	1.84
63383--63420	2	19.0	2	100	0	76	50	0	0	50	1.00
65921--65980	30	2.0	30	96	0	111	31	15	20	33	1.93
70183--70217	4	8.8	4	100	0	70	0	22	0	77	0.78
70333--70358	4	6.5	4	100	0	52	23	0	0	76	0.78
71378--71421	2	22.0	2	100	0	88	50	0	0	50	1.00
71436--71498	19	3.3	18	77	18	56	52	0	0	47	1.00
71475--71516	14	2.8	15	78	7	50	50	0	0	50	1.00
80141--80277	61	2.2	61	79	5	168	35	10	5	48	1.63
80335--80497	18	8.9	18	68	18	104	39	7	6	45	1.60
80310--80424	51	2.3	51	73	10	119	40	6	6	46	1.53
80347--80487	58	2.4	59	88	7	196	41	9	6	43	1.62
80521--80555	7	5.0	7	85	0	52	17	0	37	45	1.48
80561--80640	9	8.7	9	68	23	51	43	3	7	45	1.50
80563--80640	36	2.2	38	84	9	101	43	3	7	44	1.51
80559--80624	11	5.9	11	73	16	55	39	4	7	48	1.52
80628--80699	27	2.7	27	89	4	110	48	2	8	40	1.48
80609--80673	20	3.3	19	80	8	58	50	1	7	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80629--80711	20	4.2	20	75	13	64	49	3	8	38	1.51
80733--80859	18	6.7	20	70	25	89	40	7	9	43	1.64
80729--81039	33	9.1	33	73	13	118	41	6	8	43	1.59
80735--80871	38	3.6	38	80	15	142	40	6	9	43	1.63
80789--80859	18	3.8	18	80	14	90	40	7	9	42	1.65
80860--80915	20	2.8	20	73	7	51	51	3	3	41	1.36
80888--80922	18	1.9	18	88	0	52	45	2	5	45	1.41
80975--80999	13	1.9	13	100	0	50	40	0	8	52	1.31
80967--81015	22	2.2	22	92	0	80	34	4	10	51	1.55
80975--81020	22	2.1	22	91	0	74	36	4	8	50	1.53
81163--81192	15	2.0	15	93	0	51	50	13	0	36	1.42
81165--81228	22	2.9	22	77	11	67	46	7	3	42	1.48
81211--81268	22	2.4	25	81	16	70	41	3	5	50	1.42
81330--81393	20	3.4	19	80	10	69	39	3	12	45	1.58
81352--81462	18	5.8	18	72	19	82	45	4	4	45	1.44
81350--81474	20	6.4	19	75	11	119	46	4	4	45	1.40
81581--82501	216	4.3	209	89	4	1299	30	11	8	50	1.67
81577--82483	426	2.1	423	91	1	1447	30	11	8	50	1.68
84584--84655	2	36.0	2	97	0	135	48	0	0	51	1.00
86524--86559	16	2.2	16	95	0	63	75	0	25	0	0.81
90146--90401	45	5.7	45	91	1	399	30	21	8	39	1.83

Tables:   1

The End!