genome.fa.s2751.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002751.1 Hibiscus syriacus cultivar Beakdansim tig00005668_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80728

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3527--3568	20	2.1	20	86	8	59	30	9	21	38	1.85
7075--7119	23	2.0	23	90	0	72	60	15	13	11	1.60
9890--9919	13	2.4	13	94	5	53	43	0	30	26	1.55
16753--16791	18	2.1	18	86	13	53	53	7	5	33	1.51
18616--18648	12	2.6	13	90	4	50	45	6	12	36	1.66
22528--22564	19	1.9	19	88	0	56	64	2	0	32	1.07
24071--24144	15	5.1	14	76	19	55	58	1	0	40	1.07
24078--24142	3	21.0	3	81	6	76	60	1	0	38	1.07
24113--24148	18	2.0	18	94	0	63	58	0	0	41	0.98
24270--25786	75	20.2	75	96	1	2754	35	20	21	23	1.96
24270--25786	151	10.1	151	96	1	2764	35	20	21	23	1.96
25734--25848	31	3.8	31	95	2	198	36	22	19	21	1.95
25659--25924	138	1.9	135	96	2	496	35	21	20	22	1.96
25794--25946	76	2.0	77	93	2	263	33	21	22	22	1.97
29169--29387	83	2.6	83	96	0	402	37	22	14	25	1.92
37011--37047	19	1.9	19	88	0	56	64	2	0	32	1.07
38568--38641	15	5.1	14	76	19	55	58	1	0	40	1.07
38575--38639	3	21.0	3	81	6	76	60	1	0	38	1.07
38610--38645	18	2.0	18	94	0	63	58	0	0	41	0.98
42798--42859	11	6.1	11	82	17	89	19	19	25	35	1.95
42798--42856	20	3.0	20	97	2	111	18	20	25	35	1.95
42906--42940	18	1.9	18	100	0	70	17	48	22	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42886--42929	13	3.4	13	96	0	79	15	47	20	15	1.82
42876--42947	26	2.8	26	71	24	71	15	44	20	19	1.86
42949--43014	29	2.3	29	86	0	87	25	7	25	40	1.82
42949--43023	29	2.6	28	81	8	78	25	6	25	42	1.79
49993--50022	10	3.0	10	95	0	51	13	60	26	0	1.34
50047--50082	10	3.6	10	85	14	56	13	22	30	33	1.93
50115--50149	18	1.9	18	100	0	70	17	48	22	11	1.79
50095--50138	13	3.4	13	96	0	79	15	47	20	15	1.82
50085--50156	26	2.8	26	71	24	71	15	44	20	19	1.86
50158--50223	29	2.3	29	86	0	87	25	7	25	40	1.82
50158--50232	29	2.6	28	81	8	78	25	6	25	42	1.79
50957--51025	24	2.9	24	73	0	66	24	11	18	44	1.83
51876--52048	47	3.8	45	90	4	242	30	20	7	41	1.80
51935--52012	25	3.2	25	64	29	69	29	21	8	39	1.84
51876--52070	47	4.4	45	82	12	203	31	21	6	40	1.79
55981--56035	20	2.8	20	97	0	101	29	21	21	27	1.99
56195--56234	19	2.2	19	86	13	57	60	7	0	32	1.25
58162--58224	31	2.0	31	84	6	83	31	6	9	52	1.59
58466--58490	12	2.1	12	100	0	50	24	0	0	76	0.80
58469--58518	16	3.1	16	78	18	59	26	0	2	72	0.96
58481--58519	19	2.0	20	90	5	62	28	0	2	69	1.02
58465--58519	11	5.3	10	77	18	51	27	0	1	70	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58571--58610	17	2.4	17	86	0	53	30	42	12	15	1.83
60371--60419	22	2.3	22	83	13	59	48	2	0	48	1.12
63076--63301	114	2.0	114	90	1	355	31	15	21	30	1.95
65379--65517	50	2.6	54	81	7	171	38	12	21	27	1.90
65882--65960	22	3.6	22	89	0	113	32	16	13	36	1.88
66397--66746	112	3.2	112	94	3	606	36	16	20	26	1.94
66656--66819	73	2.2	73	97	0	310	31	17	20	31	1.96
66544--66888	186	1.9	185	98	0	663	34	17	19	28	1.94
66765--67018	130	1.9	132	95	2	467	37	17	18	26	1.93
66898--67230	111	3.0	110	88	4	465	36	16	18	27	1.93
67563--67602	7	5.9	7	91	2	64	85	0	0	15	0.61
67695--67719	12	2.1	12	100	0	50	24	0	0	76	0.80
67698--67747	16	3.1	16	78	18	59	26	0	2	72	0.96
67710--67748	19	2.0	20	90	5	62	28	0	2	69	1.02
67694--67748	11	5.3	10	77	18	51	27	0	1	70	0.97
70145--70184	22	1.9	22	85	10	57	50	0	0	50	1.00
74523--74593	33	2.2	33	97	0	133	33	12	9	43	1.76
78328--78392	30	2.2	29	88	2	103	44	3	10	41	1.55

Tables:   1

The End!