genome.fa.s2752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002752.1 Hibiscus syriacus cultivar Beakdansim tig00005669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75055

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331--382	25	2.1	25	85	7	70	69	7	1	21	1.24
501--541	22	1.9	22	90	5	66	58	9	7	24	1.55
493--542	21	2.5	20	81	15	59	60	10	6	24	1.51
4734--4814	40	2.1	39	97	2	153	18	24	16	40	1.90
6024--6174	75	2.0	75	98	0	293	31	21	12	34	1.91
7033--7186	64	2.4	64	78	9	163	35	20	18	25	1.95
7563--7643	29	2.8	29	94	3	137	43	16	23	17	1.88
15926--15965	21	1.9	21	85	10	55	35	10	2	52	1.48
23142--23298	64	2.5	64	75	10	151	36	18	18	26	1.94
23677--23757	29	2.8	28	94	3	135	44	14	22	18	1.86
28741--28786	24	1.9	24	86	8	67	30	0	4	65	1.12
28764--28801	17	2.3	17	90	4	60	36	0	5	57	1.21
34185--34229	21	2.1	21	87	0	63	31	28	24	15	1.96
34807--34841	18	1.9	18	88	11	54	54	5	17	22	1.64
34898--34941	22	2.0	22	86	4	63	45	0	22	31	1.53
35651--35954	149	2.0	149	95	0	554	27	17	20	34	1.94
35933--35977	23	2.0	23	82	8	56	20	22	28	28	1.98
37775--37817	22	2.0	22	95	0	77	51	11	0	37	1.39
37802--37890	18	5.4	18	64	24	61	52	12	0	34	1.39
37777--37825	22	2.2	22	85	3	62	55	12	0	32	1.37
37797--38102	32	10.7	32	73	20	254	51	12	0	35	1.44
37963--38006	22	2.0	22	82	8	54	54	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37924--38097	54	3.2	54	91	1	287	51	10	1	36	1.44
37774--38225	188	2.3	195	91	3	738	51	11	0	35	1.45
37986--38230	134	1.8	133	95	0	445	51	11	1	35	1.46
38032--38181	80	1.9	80	97	2	284	52	12	2	33	1.51
38129--38249	32	4.3	30	75	24	120	52	9	0	38	1.33
38161--38203	22	2.0	22	100	0	86	51	13	0	34	1.42
38163--38211	22	2.2	22	88	3	71	55	14	0	30	1.40
38112--38230	54	2.2	54	93	1	204	52	10	0	35	1.42
39198--39226	2	14.5	2	100	0	58	48	0	0	51	1.00
43339--43425	35	2.5	34	80	12	97	55	10	8	26	1.61
43653--43702	15	3.3	15	85	0	73	12	34	20	34	1.89
43635--43702	18	3.8	18	78	0	82	11	32	20	35	1.89
43638--43700	33	1.9	33	90	0	99	12	31	20	34	1.90
43635--43681	21	2.2	21	84	0	58	10	31	21	36	1.88
45561--45782	111	2.0	111	93	0	381	44	11	8	35	1.71
45906--45946	10	4.1	10	84	12	57	39	0	29	31	1.57
46082--46194	50	2.3	49	84	6	147	19	28	36	15	1.93
56635--56801	33	5.1	33	90	0	244	29	15	34	20	1.93
57488--57513	7	3.7	7	100	0	52	26	15	42	15	1.87
60623--60907	37	8.1	33	70	19	134	42	4	7	45	1.51
60671--60927	34	7.3	35	74	18	178	42	4	7	45	1.54
60737--60761	12	2.1	12	100	0	50	40	8	8	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60618--60819	71	2.9	71	81	12	199	43	3	6	46	1.48
60771--60795	11	2.3	11	100	0	50	40	8	8	44	1.63
60771--60906	72	1.9	71	82	11	170	40	5	8	45	1.57
60891--60935	23	2.0	23	82	8	56	35	0	8	55	1.31
60941--60981	5	8.0	5	86	13	57	21	0	0	78	0.76
60941--60981	16	2.7	14	85	14	55	21	0	0	78	0.76
60941--60981	11	4.0	10	84	15	57	21	0	0	78	0.76
62101--62146	24	1.9	24	82	8	58	26	6	0	67	1.15
62143--62203	22	3.0	19	73	17	52	19	4	0	75	0.98
67315--67958	164	3.9	164	89	2	927	30	24	20	24	1.99
67296--67892	81	7.3	81	77	6	603	30	24	21	23	1.99
68558--68852	72	4.2	71	75	11	216	43	3	7	46	1.49
68544--68757	34	6.0	36	76	17	173	44	4	6	44	1.49
68681--68705	12	2.1	12	100	0	50	40	8	8	44	1.63
68614--68756	33	4.2	33	82	12	171	45	4	6	42	1.52
68715--68739	11	2.3	11	100	0	50	40	8	8	44	1.63
68615--68775	33	4.7	32	77	13	126	44	4	8	43	1.53
68831--68876	24	1.9	24	82	8	58	34	0	8	56	1.30
68885--68926	11	3.7	11	96	3	75	19	0	0	80	0.70
68882--68929	16	2.9	17	88	11	66	20	0	0	79	0.74
68892--68929	5	7.2	5	88	11	58	18	0	0	81	0.69
70048--70106	24	2.5	23	83	5	73	23	5	0	71	1.06

Tables:   1

The End!