Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002755.1 Hibiscus syriacus cultivar Beakdansim tig00005678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 722678
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
File 2 of 4
Found at i:216996 original size:24 final size:24
Alignment explanation
Indices: 216969--217016 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
216959 AGTCATAGCT
216969 ACATTTGACTTGCCCTTAAGTTGA
1 ACATTTGACTTGCCCTTAAGTTGA
216993 ACATTTGACTTGCCCTTAAGTTGA
1 ACATTTGACTTGCCCTTAAGTTGA
217017 GTAAATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (24 bp):
ACATTTGACTTGCCCTTAAGTTGA
Found at i:223233 original size:15 final size:17
Alignment explanation
Indices: 223213--223245 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
223203 ATGTATCACA
223213 TTGACTT-TT-AAAACT
1 TTGACTTGTTGAAAACT
223228 TTGACTTGTTGAAAACT
1 TTGACTTGTTGAAAACT
223245 T
1 T
223246 GTTGAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (17 bp):
TTGACTTGTTGAAAACT
Found at i:223833 original size:24 final size:24
Alignment explanation
Indices: 223779--223836 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
223769 CACCAAAGTG
*
223779 CCACGTAGAATTTGTCCCGAAGGA
1 CCACGTAGAATTTATCCCGAAGGA
*** *
223803 GTGCGTAGAATTTATCCCGAATGA
1 CCACGTAGAATTTATCCCGAAGGA
223827 CCACGTAGAA
1 CCACGTAGAA
223837 CCCTCGACTC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (24 bp):
CCACGTAGAATTTATCCCGAAGGA
Found at i:226520 original size:43 final size:43
Alignment explanation
Indices: 226473--226556 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
226463 TTTATTTCAC
*
226473 AAACACCACAATAGGTTAGG-TCATTTAGCGGCGTTTCTAAACA
1 AAACACCACAAAAGGTTAGGAT-ATTTAGCGGCGTTTCTAAACA
** * *
226516 AAACACTGCAAAAGGTTAGGATATTTAGCGGTGTTTGTAAA
1 AAACACCACAAAAGGTTAGGATATTTAGCGGCGTTTCTAAA
226557 TAAACTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (43 bp):
AAACACCACAAAAGGTTAGGATATTTAGCGGCGTTTCTAAACA
Found at i:227436 original size:33 final size:33
Alignment explanation
Indices: 227394--227466 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
227384 ACAACTATGA
227394 ATTTTCTCATAACCAAGACCCAAATCATTTATC
1 ATTTTCTCATAACCAAGACCCAAATCATTTATC
227427 ATTTTCTCATAACCAAGACCCAAATCATTTATC
1 ATTTTCTCATAACCAAGACCCAAATCATTTATC
227460 ATTTTCT
1 ATTTTCT
227467 TTATATCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (33 bp):
ATTTTCTCATAACCAAGACCCAAATCATTTATC
Found at i:231170 original size:19 final size:19
Alignment explanation
Indices: 231146--231184 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
231136 CTTTCAAATC
*
231146 TATACTTTCTATAAAAAAA
1 TATACTTACTATAAAAAAA
231165 TATACTTACTATAAAAAAA
1 TATACTTACTATAAAAAAA
231184 T
1 T
231185 GTCTTCCAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (19 bp):
TATACTTACTATAAAAAAA
Found at i:238132 original size:14 final size:14
Alignment explanation
Indices: 238110--238184 Score: 56
Period size: 14 Copynumber: 5.9 Consensus size: 14
238100 TAATCACTAA
*
238110 TAATGATTTAATAC
1 TAATAATTTAATAC
238124 TAATAATTT-AT--
1 TAATAATTTAATAC
*
238135 TAATAA--T-AT-T
1 TAATAATTTAATAC
*
238145 TAATGATTTAATAC
1 TAATAATTTAATAC
* *
238159 TAATGATTTAATAA
1 TAATAATTTAATAC
238173 TAATAATTTAAT
1 TAATAATTTAAT
238185 GATTTGATAC
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
9 3 0.06
10 5 0.10
11 6 0.12
12 1 0.02
13 4 0.08
14 32 0.63
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (14 bp):
TAATAATTTAATAC
Found at i:238153 original size:21 final size:22
Alignment explanation
Indices: 238124--238276 Score: 66
Period size: 21 Copynumber: 6.7 Consensus size: 22
238114 GATTTAATAC
*
238124 TAATAATTTATTAATAAT-ATT
1 TAATAATTTAATAATAATGATT
* *
238145 TAATGATTTAATACTAATGATT
1 TAATAATTTAATAATAATGATT
238167 TAATAA--TAATAATTTAATGATT
1 TAATAATTTAATAA--TAATGATT
* * *
238189 TGATACTAATAATTTAATAATGATT
1 TAATAAT-TTAA--TAATAATGATT
** * *
238214 ACTAATAATGAAATTATAATAATT
1 --TAATAATTTAATAATAATGATT
238238 ACTAATAATGATT--TAATAATGA-T
1 --TAATAAT--TTAATAATAATGATT
*
238261 TATTAATTTAATAATA
1 TAATAATTTAATAATA
238277 TTTAATGATT
Statistics
Matches: 100, Mismatches: 18, Indels: 28
0.68 0.12 0.19
Matches are distributed among these distances:
19 2 0.02
20 5 0.05
21 26 0.26
22 20 0.20
23 1 0.01
24 25 0.25
25 11 0.11
26 2 0.02
27 8 0.08
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (22 bp):
TAATAATTTAATAATAATGATT
Found at i:238154 original size:35 final size:36
Alignment explanation
Indices: 238051--238209 Score: 169
Period size: 35 Copynumber: 4.4 Consensus size: 36
238041 TTCATGAATT
* * * * *
238051 TAATGATTTAATAATAATGATTCAATG-CTTAATGC
1 TAATAATTTAATAATAATAATTTAATGATTTAATAC
* * * * *
238086 TATTGATTTAATAGTAATCACTAATAATGATTTAATAC
1 TAATAATTTAATAATAAT-AAT-TTAATGATTTAATAC
*
238124 TAATAATTTATTAATAAT-ATTTAATGATTTAATAC
1 TAATAATTTAATAATAATAATTTAATGATTTAATAC
* *
238159 TAATGATTTAATAATAATAATTTAATGATTTGATAC
1 TAATAATTTAATAATAATAATTTAATGATTTAATAC
238195 TAATAATTTAATAAT
1 TAATAATTTAATAAT
238210 GATTACTAAT
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
35 46 0.45
36 32 0.31
37 4 0.04
38 20 0.20
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (36 bp):
TAATAATTTAATAATAATAATTTAATGATTTAATAC
Found at i:238198 original size:14 final size:14
Alignment explanation
Indices: 238145--238404 Score: 97
Period size: 14 Copynumber: 18.8 Consensus size: 14
238135 TAATAATATT
*
238145 TAATGATTTAATAC
1 TAATGATTTAATAA
238159 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
238173 TAATAATTTAATGA
1 TAATGATTTAATAA
*
238187 T-TTGATACTAATAATTTAA
1 TAATGAT--T--TAA--TAA
*
238206 TAATGA-TTACTAA
1 TAATGATTTAATAA
*
238219 TAATGA---AATTA
1 TAATGATTTAATAA
* *
238230 TAAT-AATTACTAA
1 TAATGATTTAATAA
238243 TAATGATTTAATAA
1 TAATGATTTAATAA
*
238257 TGATTATTAATTTAATAATA
1 T-A--A-TGATTTAAT-A-A
*
238277 TTTAATGATTTGATAA
1 --TAATGATTTAATAA
238293 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
238307 TAATTA-CTAATAA
1 TAATGATTTAATAA
*
238320 TAA--AATT-ATAA
1 TAATGATTTAATAA
*
238331 T-A--A-TTACTAA
1 TAATGATTTAATAA
238341 TAATGATTTAATTAA
1 TAATGATTTAA-TAA
*
238356 TAATGA-TTACTAA
1 TAATGATTTAATAA
*
238369 TAATAATTT-AT--
1 TAATGATTTAATAA
238380 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
238394 CAATTATTTAA
1 TAATGATTTAA
238405 GGCAATGATT
Statistics
Matches: 187, Mismatches: 29, Indels: 60
0.68 0.11 0.22
Matches are distributed among these distances:
9 2 0.01
10 7 0.04
11 22 0.12
12 3 0.02
13 38 0.20
14 69 0.37
15 13 0.07
16 1 0.01
17 6 0.03
18 15 0.08
19 5 0.03
20 4 0.02
21 1 0.01
22 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:238232 original size:24 final size:24
Alignment explanation
Indices: 238205--238387 Score: 144
Period size: 24 Copynumber: 7.4 Consensus size: 24
238195 TAATAATTTA
238205 ATAATGATTACTAATAATGAAATT
1 ATAATGATTACTAATAATGAAATT
* *
238229 ATAATAATTACTAATAATG-ATTT
1 ATAATGATTACTAATAATGAAATT
*
238252 AATAATGATTATTAATTTAAT-AATATT
1 -ATAATGATTACTAA--TAATGAA-ATT
*
238279 -TAATGATTTGA-TAATAATG-ATTT
1 ATAATGA-TT-ACTAATAATGAAATT
* *
238302 AATAATAATTACTAATAATAAAATT
1 -ATAATGATTACTAATAATGAAATT
*
238327 ATAATAATTACTAATAATGATTTAATT
1 ATAATGATTACTAATAATGA---AATT
*
238354 AATAATGATTACTAATAAT-AATTT
1 -ATAATGATTACTAATAATGAAATT
238378 ATTAATGATT
1 A-TAATGATT
238388 TAATAACAAT
Statistics
Matches: 130, Mismatches: 12, Indels: 34
0.74 0.07 0.19
Matches are distributed among these distances:
23 7 0.05
24 74 0.57
25 14 0.11
26 10 0.08
27 8 0.06
28 17 0.13
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (24 bp):
ATAATGATTACTAATAATGAAATT
Found at i:238245 original size:10 final size:9
Alignment explanation
Indices: 238195--238372 Score: 51
Period size: 10 Copynumber: 18.8 Consensus size: 9
238185 GATTTGATAC
238195 TAATAATT-
1 TAATAATTA
*
238203 TAATAATGA
1 TAATAATTA
* *
238212 TTACTAATAA
1 -TAATAATTA
*
238222 TGA-AATTA
1 TAATAATTA
238230 TAATAATTA
1 TAATAATTA
*
238239 CTAATAATGATT
1 -TAATAAT--TA
*
238251 TAATAATGA
1 TAATAATTA
*
238260 TTATTAATT-
1 -TAATAATTA
*
238269 TAATAATATT
1 TAATAAT-TA
*
238279 TAATGATTTGA
1 TAAT-AATT-A
*
238290 TAATAATGATT
1 TAATAAT--TA
*
238301 TAATAATAA
1 TAATAATTA
* *
238310 TTACTAATAA
1 -TAATAATTA
238320 TAA-AATTA
1 TAATAATTA
238328 TAATAATTA
1 TAATAATTA
*
238337 CTAATAATGA
1 -TAATAATTA
*
238347 T-TTAATTAA
1 TAATAATT-A
*
238356 TAATGATTA
1 TAATAATTA
238365 CTAATAAT
1 -TAATAAT
238373 AATTTATTAA
Statistics
Matches: 123, Mismatches: 28, Indels: 36
0.66 0.15 0.19
Matches are distributed among these distances:
8 30 0.24
9 18 0.15
10 53 0.43
11 20 0.16
12 2 0.02
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (9 bp):
TAATAATTA
Found at i:238253 original size:98 final size:97
Alignment explanation
Indices: 238145--238378 Score: 353
Period size: 98 Copynumber: 2.4 Consensus size: 97
238135 TAATAATATT
* *
238145 TAATGATTTAATACTAATGATTTAATAATAATAATTTAATGATTTGATACTAATAATTTAATAAT
1 TAATGATTTAATAATAATGA-TTAATAATAATAATTTAATGATTTGATAATAATAATTTAATAAT
* *
238210 GATTACTAATAATGAAATTATAATAATTACTAA
65 AATTACTAATAATAAAATTATAATAATTACTAA
* * *
238243 TAATGATTTAATAATGATTATTAATTTAATAAT-ATTTAATGATTTGATAATAATGATTTAATAA
1 TAATGATTTAATAATAATGATTAA--TAATAATAATTTAATGATTTGATAATAATAATTTAATAA
238307 TAATTACTAATAATAAAATTATAATAATTACTAA
64 TAATTACTAATAATAAAATTATAATAATTACTAA
*
238341 TAATGATTTAATTAATAATGATTACTAATAATAATTTA
1 TAATGATTTAA-TAATAATGATTAATAATAATAATTTA
238379 TTAATGATTT
Statistics
Matches: 122, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
97 11 0.09
98 94 0.77
99 17 0.14
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (97 bp):
TAATGATTTAATAATAATGATTAATAATAATAATTTAATGATTTGATAATAATAATTTAATAATA
ATTACTAATAATAAAATTATAATAATTACTAA
Found at i:238287 original size:18 final size:17
Alignment explanation
Indices: 238243--238308 Score: 66
Period size: 18 Copynumber: 3.9 Consensus size: 17
238233 TAATTACTAA
238243 TAATGATTTAATAATGAT
1 TAATGATTTAATAAT-AT
* *
238261 TATTAATTTAATAATATT
1 TAATGATTTAATAATA-T
*
238279 TAATGATTTGAT-A-A-
1 TAATGATTTAATAATAT
238293 TAATGATTTAATAATA
1 TAATGATTTAATAATA
238309 ATTACTAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
14 11 0.28
15 1 0.03
16 2 0.05
17 2 0.05
18 23 0.59
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (17 bp):
TAATGATTTAATAATAT
Found at i:238352 original size:21 final size:20
Alignment explanation
Indices: 238124--238352 Score: 70
Period size: 24 Copynumber: 10.2 Consensus size: 20
238114 GATTTAATAC
238124 TAATAATTTATTAATAAT-ATT
1 TAATAA-TTA-TAATAATGATT
* *
238145 TAATGATTTAATACTAATGATT
1 TAAT-AATT-ATAATAATGATT
*
238167 TAATAATAATAATTTAATGATT
1 TAATAATTATAA--TAATGATT
*
238189 TGATACTAATAATTTAATAATGATT
1 T-A-A-TAAT--TATAATAATGATT
* * *
238214 ACTAATAATGAAATTATAATAATT
1 --TAATAAT--TATAATAATGATT
*
238238 ACTAATAATGATTTAATAATGA-T
1 --TAATAAT--TATAATAATGATT
*
238261 TATTAATT-TAATAAT-ATT
1 TAATAATTATAATAATGATT
*
238279 TAATGATTTGATAATAATGATTT
1 TAAT-AATT-ATAATAATGA-TT
*
238302 AATAATAATTACTAATAATAAAATT
1 --TAATAATTA-TAATAAT--GATT
238327 ATAATAATTACTAATAATGATT
1 -TAATAATTA-TAATAATGATT
238349 TAAT
1 TAAT
238353 TAATAATGAT
Statistics
Matches: 163, Mismatches: 22, Indels: 46
0.71 0.10 0.20
Matches are distributed among these distances:
17 1 0.01
18 11 0.07
19 4 0.02
20 3 0.02
21 31 0.19
22 22 0.13
23 5 0.03
24 61 0.37
25 19 0.12
26 2 0.01
27 4 0.02
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (20 bp):
TAATAATTATAATAATGATT
Found at i:238463 original size:14 final size:15
Alignment explanation
Indices: 238428--238469 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
238418 CACGTGAATA
238428 ATATTTAATATTTTT
1 ATATTTAATATTTTT
*
238443 CTATTTAATATTTTT
1 ATATTTAATATTTTT
238458 AT-TTTAATATTT
1 ATATTTAATATTT
238470 AAATGAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
ATATTTAATATTTTT
Found at i:238496 original size:13 final size:13
Alignment explanation
Indices: 238446--238535 Score: 60
Period size: 13 Copynumber: 6.8 Consensus size: 13
238436 TATTTTTCTA
*
238446 TTTAATATTTTTAT
1 TTTAATA-TTTAAT
*
238460 TTTAATATTTAAA
1 TTTAATATTTAAT
** *
238473 TGAAATCTTTAAT
1 TTTAATATTTAAT
238486 TTT-ATATTTTAAT
1 TTTAATA-TTTAAT
*
238499 ATTTAA-ATTAAAT
1 -TTTAATATTTAAT
*
238512 ATTTAAT-TTTTAT
1 -TTTAATATTTAAT
238525 TTTAATATTTA
1 TTTAATATTTA
238536 GATATAAATT
Statistics
Matches: 58, Mismatches: 13, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
12 8 0.14
13 38 0.66
14 11 0.19
15 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (13 bp):
TTTAATATTTAAT
Found at i:238531 original size:32 final size:32
Alignment explanation
Indices: 238452--238544 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 32
238442 TCTATTTAAT
* *
238452 ATTTTTATTTTAATATTTAAATGAAATCTTTA
1 ATTTTTATTTTAATATTTAAATTAAATATTTA
238484 ATTTTATATTTTAATATTTAAATTAAATATTTA
1 ATTTT-TATTTTAATATTTAAATTAAATATTTA
*
238517 ATTTTTATTTTAATATTTAGATATAAAT
1 ATTTTTATTTTAATATTTAAAT-TAAAT
238545 TTCATTGTAC
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
32 21 0.38
33 35 0.62
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (32 bp):
ATTTTTATTTTAATATTTAAATTAAATATTTA
Found at i:238540 original size:8 final size:7
Alignment explanation
Indices: 238426--238540 Score: 73
Period size: 7 Copynumber: 16.9 Consensus size: 7
238416 TTCACGTGAA
238426 TAATATT
1 TAATATT
238433 TAATATTT
1 TAATA-TT
**
238441 TTCTATT
1 TAATATT
238448 TAATATT
1 TAATATT
*
238455 T-TTATTT
1 TAATA-TT
238462 TAATATT
1 TAATATT
*
238469 TAA-ATG
1 TAATATT
* *
238475 AAATCTT
1 TAATATT
238482 TAAT-TT
1 TAATATT
238488 T-ATATTT
1 TAATA-TT
238495 TAATATT
1 TAATATT
238502 TAA-ATT
1 TAATATT
*
238508 AAATATT
1 TAATATT
238515 TAAT-TT
1 TAATATT
*
238521 TTAT-TT
1 TAATATT
238527 TAATATT
1 TAATATT
238534 TAGATAT
1 TA-ATAT
238541 AAATTTCATT
Statistics
Matches: 83, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
5 2 0.02
6 24 0.29
7 43 0.52
8 14 0.17
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (7 bp):
TAATATT
Found at i:239438 original size:18 final size:19
Alignment explanation
Indices: 239387--239438 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
239377 AATGTTTTTA
239387 AATGATTTAATGATTTAAT
1 AATGATTTAATGATTTAAT
* *
239406 AATGA-TTACTAATTTAAT
1 AATGATTTAATGATTTAAT
239424 AAT-ATTTAATGATTT
1 AATGATTTAATGATTT
239439 GATACTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 1 0.04
18 22 0.79
19 5 0.18
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (19 bp):
AATGATTTAATGATTTAAT
Found at i:239470 original size:13 final size:13
Alignment explanation
Indices: 239452--239524 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
239442 ACTAATTATT
239452 TAATAATGATTAC
1 TAATAATGATTAC
*
239465 TAATAATGA--AA
1 TAATAATGATTAC
* *
239476 TTATAATAATTAC
1 TAATAATGATTAC
239489 TAATAATGATTAC
1 TAATAATGATTAC
239502 TAATAATGATT--
1 TAATAATGATTAC
239513 TAATAATGATTA
1 TAATAATGATTA
239525 AATATTTAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
11 19 0.37
13 32 0.63
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (13 bp):
TAATAATGATTAC
Found at i:239516 original size:24 final size:23
Alignment explanation
Indices: 239430--239528 Score: 78
Period size: 24 Copynumber: 4.1 Consensus size: 23
239420 TAATAATATT
*
239430 TAATGATTTGATACTAATTATT-TAA
1 TAATGATTT-A-A-TAATGATTATAA
239455 TAATGATTACTAATAATGAAATTATAA
1 TAATGATT--TAATAATG--ATTATAA
* *
239482 TAATTA-CTAATAATGATTACTAA
1 TAATGATTTAATAATGATTA-TAA
239505 TAATGATTTAATAATGATTA-AA
1 TAATGATTTAATAATGATTATAA
239527 TA
1 TA
239529 TTTAATTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
22 8 0.13
23 8 0.13
24 24 0.39
25 9 0.15
26 4 0.06
27 9 0.15
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.41
Consensus pattern (23 bp):
TAATGATTTAATAATGATTATAA
Found at i:246697 original size:20 final size:20
Alignment explanation
Indices: 246674--246717 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
246664 GTCAGTACCA
246674 ATATTG-ACCCCTTAGTATCG
1 ATATTGAACCCCTT-GTATCG
*
246694 ATATTGAACCTCTTGTATCG
1 ATATTGAACCCCTTGTATCG
246714 ATAT
1 ATAT
246718 CCGTCTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (20 bp):
ATATTGAACCCCTTGTATCG
Found at i:255736 original size:15 final size:16
Alignment explanation
Indices: 255708--255739 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
255698 ATTCTAAATA
255708 AAATAAAAAGCAAAGT
1 AAATAAAAAGCAAAGT
255724 AAATAAAAA-CAAAGT
1 AAATAAAAAGCAAAGT
255739 A
1 A
255740 TAGAGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.72, C:0.06, G:0.09, T:0.12
Consensus pattern (16 bp):
AAATAAAAAGCAAAGT
Found at i:269982 original size:22 final size:22
Alignment explanation
Indices: 269948--270009 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
269938 ATAATTATTT
*
269948 AAAAA-ATTAAATAAAAAAACC
1 AAAAATATTTAATAAAAAAACC
* *
269969 AAAAATATTTAATAAAAATATC
1 AAAAATATTTAATAAAAAAACC
269991 AAAAATATTTAATAAAAAA
1 AAAAATATTTAATAAAAAA
270010 TAATTTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 5 0.14
22 31 0.86
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAAATATTTAATAAAAAAACC
Found at i:276601 original size:21 final size:21
Alignment explanation
Indices: 276575--276620 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 21
276565 GAATTTTAAG
276575 TAAAA-AAAAAAAAGCAACATGA
1 TAAAACAAAAAAAA--AACATGA
276597 TAAAACAAAAAAAAAACATGA
1 TAAAACAAAAAAAAAACATGA
276618 TAA
1 TAA
276621 TAAATAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.43
22 5 0.22
23 8 0.35
ACGTcount: A:0.74, C:0.09, G:0.07, T:0.11
Consensus pattern (21 bp):
TAAAACAAAAAAAAAACATGA
Found at i:276808 original size:27 final size:26
Alignment explanation
Indices: 276768--276820 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
276758 ATTTATTAAA
*
276768 AATAAAAATATAAAAAATAAAGATAT
1 AATAAAAATATAAAAAATAAAAATAT
*
276794 AATATAAAATTTAAAAAATAAAAATAT
1 AATA-AAAATATAAAAAATAAAAATAT
276821 TGGTGAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (26 bp):
AATAAAAATATAAAAAATAAAAATAT
Found at i:281171 original size:77 final size:77
Alignment explanation
Indices: 280977--281432 Score: 497
Period size: 77 Copynumber: 5.9 Consensus size: 77
280967 GAAATACAGA
** * * * * * *
280977 TGCGCCCAAGAAAATCATGGTTCACTAAGAAATAGGTTGCGCTATGAAATATTAATATTTTTATT
1 TGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTTATT
*
281042 AATAAAATGAGT
66 AATAAAATGGGT
* * *
281054 TAGCGCCCAAGACTGTCATGATTCATTAAGAAATAGGTTGTGATCTGGAATGTTAATAATTTTAT
1 T-GCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTTAT
281119 TAATAAAATGGGT
65 TAATAAAATGGGT
* *
281132 TGCGTCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTGAT-ATTTTCAT
1 TGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTT-AT
* *
281196 TAATATAATGTGT
65 TAATAAAATGGGT
* * * ** *
281209 TGCGCCCAAAAATGTCAT-AGTTCACTAAGAAATAGGTTGCGATCTATAATGTTAATATTTTTAT
1 TGCGCCCAAGAATGTCATGA-TTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTTAT
281273 TAATAAAATGGGT
65 TAATAAAATGGGT
** * * * * * *
281286 TGTTCCCAAGAATGTCATGGTTTACTAAGAAATAGTTTGTGATGTGGGATGTTAATATTTTTATT
1 TGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTTATT
281351 AATAAAATGGGT
66 AATAAAATGGGT
* * * * * * * * *
281363 TACGCTCAAGAATTTCATGGTTTACTAATAAATAGTTTATGATTTGGAATGTTAAT-ATTTT-TT
1 TGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTTATT
*
281426 TATAAAA
66 AATAAAA
281433 AAATCAAAAG
Statistics
Matches: 323, Mismatches: 51, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
75 8 0.02
76 10 0.03
77 236 0.73
78 69 0.21
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.37
Consensus pattern (77 bp):
TGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTAATAATTTTATT
AATAAAATGGGT
Found at i:281271 original size:154 final size:153
Alignment explanation
Indices: 280977--281432 Score: 549
Period size: 154 Copynumber: 3.0 Consensus size: 153
280967 GAAATACAGA
* ** * * * *
280977 TGCGCCCAAGAAAATCATGGTTCACTAAGAAATAGGTTGCGCTATGAAATATTAATATTTTTATT
1 TGCGTCCAAGAATGTCATGGTTCACTAAGAAATAGGTTGTGATATGGAATGTTAATATTTTTATT
* *
281042 AATAAAATGAGTTAGCGCCCAAGACTGTCATGATTCATTAAGAAATAGGTTGTGATCTGGAATGT
66 AATAAAATGAGTT-GCGCCCAAGAATGTCATG-TTCACTAAGAAATAGGTTGTGATCTGGAATGT
*
281107 TAATAATTTTATTAATAAAATGGGT
129 TAATATTTTTATTAATAAAATGGGT
* * *
281132 TGCGTCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATATGGAATGTTGATATTTTCATT
1 TGCGTCCAAGAATGTCATGGTTCACTAAGAAATAGGTTGTGATATGGAATGTTAATATTTTTATT
* * * * **
281197 AATATAATGTGTTGCGCCCAAAAATGTCATAGTTCACTAAGAAATAGGTTGCGATCTATAATGTT
66 AATAAAATGAGTTGCGCCCAAGAATGTCAT-GTTCACTAAGAAATAGGTTGTGATCTGGAATGTT
281262 AATATTTTTATTAATAAAATGGGT
130 AATATTTTTATTAATAAAATGGGT
* * * * *
281286 TG-TTCCCAAGAATGTCATGGTTTACTAAGAAATAGTTTGTGATGTGGGATGTTAATATTTTTAT
1 TGCGT-CCAAGAATGTCATGGTTCACTAAGAAATAGGTTGTGATATGGAATGTTAATATTTTTAT
* * * * * * * * *
281350 TAATAAAATGGGTTACGCTCAAGAATTTCATGGTTTACTAATAAATAGTTTATGATTTGGAATGT
65 TAATAAAATGAGTTGCGCCCAAGAATGTCAT-GTTCACTAAGAAATAGGTTGTGATCTGGAATGT
281415 TAATATTTTT-TT-ATAAAA
129 TAATATTTTTATTAATAAAA
281433 AAATCAAAAG
Statistics
Matches: 257, Mismatches: 42, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
152 6 0.02
153 3 0.01
154 181 0.70
155 67 0.26
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.37
Consensus pattern (153 bp):
TGCGTCCAAGAATGTCATGGTTCACTAAGAAATAGGTTGTGATATGGAATGTTAATATTTTTATT
AATAAAATGAGTTGCGCCCAAGAATGTCATGTTCACTAAGAAATAGGTTGTGATCTGGAATGTTA
ATATTTTTATTAATAAAATGGGT
Found at i:281413 original size:231 final size:231
Alignment explanation
Indices: 280977--281423 Score: 614
Period size: 231 Copynumber: 1.9 Consensus size: 231
280967 GAAATACAGA
*
280977 TGCGCCCAAGAAAATCATGGTTCACTAAGAAATAGGTTGCGCTATGAAATATTAATATTTTTATT
1 TGCGCCCAAGAAAATCATAGTTCACTAAGAAATAGGTTGCGCTAT-AAATATTAATATTTTTATT
* *
281042 AATAAAATGAGTTAGCGCCCAAGACTGTCATGATTCATTAAGAAATAGGTTGTGATCTGGAATGT
65 AATAAAATGAGTTAGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATCTGGAATGT
* *
281107 TAATAATTTTATTAATAAAATGGGTTGCGTCCAAGAATGTCATGATTCACTAAGAAATAGGTTGT
130 TAATAATTTTATTAATAAAATGGGTTACGTCCAAGAATGTCATGATTCACTAAGAAATAGGTTAT
*
281172 GATATGGAATGTTGATATTTTCATTAATATAATGTGT
195 GATATGGAATGTTAATATTTTCATTAATATAATGTGT
* *
281209 TGCGCCCAA-AAATGTCATAGTTCACTAAGAAATAGGTTGCGATCTAT-AATGTTAATATTTTTA
1 TGCGCCCAAGAAA-ATCATAGTTCACTAAGAAATAGGTTGCG--CTATAAATATTAATATTTTTA
* ** * * * * *
281272 TTAATAAAATGGGTT-GTTCCCAAGAATGTCATGGTTTACTAAGAAATAGTTTGTGATGTGGGAT
63 TTAATAAAATGAGTTAGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATCTGGAAT
* * * * * *
281336 GTTAATATTTTTATTAATAAAATGGGTTACG-CTCAAGAATTTCATGGTTTACTAATAAATAGTT
128 GTTAATAATTTTATTAATAAAATGGGTTACGTC-CAAGAATGTCATGATTCACTAAGAAATAGGT
*
281400 TATGATTTGGAATGTTAATATTTT
192 TATGATATGGAATGTTAATATTTT
281424 TTTATAAAAA
Statistics
Matches: 188, Mismatches: 23, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
230 1 0.01
231 119 0.63
232 64 0.34
234 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (231 bp):
TGCGCCCAAGAAAATCATAGTTCACTAAGAAATAGGTTGCGCTATAAATATTAATATTTTTATTA
ATAAAATGAGTTAGCGCCCAAGAATGTCATGATTCACTAAGAAATAGGTTGTGATCTGGAATGTT
AATAATTTTATTAATAAAATGGGTTACGTCCAAGAATGTCATGATTCACTAAGAAATAGGTTATG
ATATGGAATGTTAATATTTTCATTAATATAATGTGT
Found at i:282068 original size:102 final size:103
Alignment explanation
Indices: 281927--282147 Score: 311
Period size: 103 Copynumber: 2.2 Consensus size: 103
281917 GTTGATAGCT
* *
281927 TTTTTTAAATTATCAACCGTTTATATTATATGTTTGAAACCGTATATATTATGAAAAAGT-A-AA
1 TTTTTTAAATTATCAACCGTTTACATTATATATTTGAAACCGTATATATTATG-AAAAGTAAGAA
* *
281990 ACAAAACAGGTTTATAAGTTTAACATTCTAGGTTGCACC
65 AAAAAACAGATTTATAAGTTTAACATTCTAGGTTGCACC
* * * *
282029 TTTTTTAAATTGTCAACCTTTTACATTATATATTTGAAACTGTTTATATTATGAAAAGTAAGAAA
1 TTTTTTAAATTATCAACCGTTTACATTATATATTTGAAACCGTATATATTATGAAAAGTAAGAAA
* * *
282094 AAAAACATATTTATAAGTTTAACATTCTAGGTTTCGCC
66 AAAAACAGATTTATAAGTTTAACATTCTAGGTTGCACC
*
282132 TTTTTTAAATTTTCAA
1 TTTTTTAAATTATCAA
282148 TCATTTCTAT
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
101 6 0.06
102 48 0.46
103 51 0.49
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.42
Consensus pattern (103 bp):
TTTTTTAAATTATCAACCGTTTACATTATATATTTGAAACCGTATATATTATGAAAAGTAAGAAA
AAAAACAGATTTATAAGTTTAACATTCTAGGTTGCACC
Found at i:284328 original size:20 final size:20
Alignment explanation
Indices: 284299--284336 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
284289 AGAACCCCAG
*
284299 GGGGGTATCGATTCCCCTGT
1 GGGGGAATCGATTCCCCTGT
*
284319 GGGGGAATCGGTTCCCCT
1 GGGGGAATCGATTCCCCT
284337 TCAAAGGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (20 bp):
GGGGGAATCGATTCCCCTGT
Found at i:290675 original size:101 final size:100
Alignment explanation
Indices: 290513--290696 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 100
290503 CGTTTTTCCA
* * * **
290513 ATGCTAAAGTAAGACAAAACATGTTTATAAGTATAACATTATAGGTAGCGCTTTTTTTAATTGTC
1 ATGCAAAAGCAAGACAAAACATGTTTATAACTATAACATTATAGGTAGCGCTTTTGCTAATTGTC
290578 AACCGTTTACGTTATATGTTTGAGACCTTTTATACT
66 AACCG-TTACGTTATATGTTTGAGACCTTTTATACT
* *
290614 ATGCAAAAGCAAGAGAAAACATGTTTATAACTATAACATTGTAGGTAGCGAC-TTTGCTAATTGT
1 ATGCAAAAGCAAGACAAAACATGTTTATAACTATAACATTATAGGTAGCG-CTTTTGCTAATTGT
* * *
290678 TAACTGTTAGGTTATATGT
65 CAACCGTTACGTTATATGT
290697 ATTAAACCGT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 12 0.17
101 59 0.82
102 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (100 bp):
ATGCAAAAGCAAGACAAAACATGTTTATAACTATAACATTATAGGTAGCGCTTTTGCTAATTGTC
AACCGTTACGTTATATGTTTGAGACCTTTTATACT
Found at i:292331 original size:18 final size:19
Alignment explanation
Indices: 292290--292331 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
292280 GAAGAATGAA
* *
292290 GAAGATGAAGAAAACTTGG
1 GAAGAAGAAGAAAACATGG
292309 G-AGAAGAAGAAAA-ATGG
1 GAAGAAGAAGAAAACATGG
292326 GAAGAA
1 GAAGAA
292332 AATGAGAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 15 0.75
19 1 0.05
ACGTcount: A:0.55, C:0.02, G:0.33, T:0.10
Consensus pattern (19 bp):
GAAGAAGAAGAAAACATGG
Found at i:301180 original size:3 final size:3
Alignment explanation
Indices: 301172--301226 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
301162 AGGCTTTGTA
301172 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
301219 AAT AAT AA
1 AAT AAT AA
301227 ACGTCACTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:301417 original size:41 final size:43
Alignment explanation
Indices: 301360--301451 Score: 152
Period size: 41 Copynumber: 2.2 Consensus size: 43
301350 AAAATTCGTC
301360 CACTACTCTTCTGTGGAGAGCGAATTTTGATC-T-TCCTGCTT
1 CACTACTCTTCTGTGGAGAGCGAATTTTGATCTTCTCCTGCTT
*
301401 CACTACTCTTTTGTGGAGAGCGAATTTTGATCTTGCTCCTGCTT
1 CACTACTCTTCTGTGGAGAGCGAATTTTGATCTT-CTCCTGCTT
301445 CACTACT
1 CACTACT
301452 ATTATGTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 31 0.66
42 1 0.02
44 15 0.32
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.39
Consensus pattern (43 bp):
CACTACTCTTCTGTGGAGAGCGAATTTTGATCTTCTCCTGCTT
Found at i:301638 original size:36 final size:35
Alignment explanation
Indices: 301590--301674 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
301580 TGCTTCATTT
*
301590 CTCTTCCGTGAAGGCTGAATTTGAAT-TACTCCACTA
1 CTCTTCCGTGAAGGCTGAA-TTG-ATCGACTCCACTA
* * * *
301626 CTCTTCCATGAAGGTTGGATTGATCGACTTCACTA
1 CTCTTCCGTGAAGGCTGAATTGATCGACTCCACTA
301661 CTCTTCCGTGAAGG
1 CTCTTCCGTGAAGG
301675 TAGGATTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
34 2 0.05
35 24 0.57
36 16 0.38
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (35 bp):
CTCTTCCGTGAAGGCTGAATTGATCGACTCCACTA
Found at i:301809 original size:89 final size:89
Alignment explanation
Indices: 301692--302121 Score: 689
Period size: 89 Copynumber: 4.8 Consensus size: 89
301682 TTAATCTAAG
* * * *
301692 AAGAATCTATTTCACTAATCTTCTGTGAAAATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
1 AAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
*
301757 CCGTGGAGCCTGGATTGACTTGAA
66 CTGTGGAGCCTGGATTGACTTGAA
*
301781 AAGAATCTGTTTCACTACTCTTCCGTGAAGATCATATTCGAGGTTAATTTGCTTCCACTACTCTT
1 AAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
* *
301846 CTATGGAGCCTAGATTGACTTGAA
66 CTGTGGAGCCTGGATTGACTTGAA
* *
301870 AAGAATCTGTTTCACTTACTATTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTTCACTACTCT
1 AAGAATCTGTTTCAC-TACTCTTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCT
301935 TCTGTGGAGCCTGGATTGACTTGAA
65 TCTGTGGAGCCTGGATTGACTTGAA
* * *
301960 AAGAATCTGTTTCACTACTCTTTCGTGAAGATCAGATTTGAGGTTAATTTGCTTCCACTACACTT
1 AAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
*
302025 CTGTGGAACCTGGATTGACTTGAA
66 CTGTGGAGCCTGGATTGACTTGAA
** * *
302049 AAGAATCTGTTTCACTACTCTTCTATGAAGATCAGATTTGAGGTTAATTTGCTTCCACTACTTTT
1 AAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
302114 CTGTGGAG
66 CTGTGGAG
302122 ATCTTACAAA
Statistics
Matches: 315, Mismatches: 25, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
89 231 0.73
90 84 0.27
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (89 bp):
AAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
CTGTGGAGCCTGGATTGACTTGAA
Found at i:301916 original size:179 final size:178
Alignment explanation
Indices: 301692--302121 Score: 698
Period size: 179 Copynumber: 2.4 Consensus size: 178
301682 TTAATCTAAG
* * *
301692 AAGAATCTATTTCACTAATCTTCTGTGAAAATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
1 AAGAATCTGTTTCACTACTCTTCTGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
* *
301757 CCGTGGAGCCTGGATTGACTTGAAAAGAATCTGTTTCACTACTCTTCCGTGAAGATCATATTCGA
66 CTGTGGAGCCTGGATTGACTTGAAAAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGA
* *
301822 GGTTAATTTGCTTCCACTACTCTTCTATGGAGCCTAGATTGACTTGAA
131 GGTTAATTTGCTTCCACTACACTTCTATGGAACCTAGATTGACTTGAA
* * *
301870 AAGAATCTGTTTCACTTACTATTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTTCACTACTCT
1 AAGAATCTGTTTCAC-TACTCTTCTGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCT
* *
301935 TCTGTGGAGCCTGGATTGACTTGAAAAGAATCTGTTTCACTACTCTTTCGTGAAGATCAGATTTG
65 TCTGTGGAGCCTGGATTGACTTGAAAAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCG
* *
302000 AGGTTAATTTGCTTCCACTACACTTCTGTGGAACCTGGATTGACTTGAA
130 AGGTTAATTTGCTTCCACTACACTTCTATGGAACCTAGATTGACTTGAA
* * *
302049 AAGAATCTGTTTCACTACTCTTCTATGAAGATCAGATTTGAGGTTAATTTGCTTCCACTACTTTT
1 AAGAATCTGTTTCACTACTCTTCTGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
302114 CTGTGGAG
66 CTGTGGAG
302122 ATCTTACAAA
Statistics
Matches: 231, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
178 66 0.29
179 165 0.71
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (178 bp):
AAGAATCTGTTTCACTACTCTTCTGTGAAGATCAGATTCGAGGTTAATTTGCTTCCACTACTCTT
CTGTGGAGCCTGGATTGACTTGAAAAGAATCTGTTTCACTACTCTTCCGTGAAGATCAGATTCGA
GGTTAATTTGCTTCCACTACACTTCTATGGAACCTAGATTGACTTGAA
Found at i:302124 original size:43 final size:43
Alignment explanation
Indices: 301704--302124 Score: 145
Period size: 43 Copynumber: 9.5 Consensus size: 43
301694 GAATCTATTT
* * *
301704 CACTAATCTTCTGTGAAAATCAGATTCGAGGTTAATTTGCTTC
1 CACTACTCTTCTGTGAAGATCAGATTTGAGGTTAATTTGCTTC
* * * * * **** * *
301747 CACTACTCTTCCGTGGAGCCTGGATTGACTTGAAAAGAATCTG-TTT
1 CACTACTCTTCTGTGAAG-AT-CA--GATTTGAGGTTAATTTGCTTC
* * *
301793 CACTACTCTTCCGTGAAGATCATATTCGAGGTTAATTTGCTTC
1 CACTACTCTTCTGTGAAGATCAGATTTGAGGTTAATTTGCTTC
* * * **** * *
301836 CACTACTCTTCTATGGAGCCTAGAT-TGACTTGAAAAGAATCTG-TTT
1 CACTACTCTTCTGT-GA----AGATCAGATTTGAGGTTAATTTGCTTC
* * * *
301882 CACTTACTATTCCGTGAAGATCAGATTCGAGGTTAATTTGCTTT
1 CAC-TACTCTTCTGTGAAGATCAGATTTGAGGTTAATTTGCTTC
* * * * **** * *
301926 CACTACTCTTCTGTGGAGCCTGGATTGACTTGAAAAGAATCTG-TTT
1 CACTACTCTTCTGTGAAG-AT-CA--GATTTGAGGTTAATTTGCTTC
301972 CACTACTCTT-TCGTGAAGATCAGATTTGAGGTTAATTTGCTTC
1 CACTACTCTTCT-GTGAAGATCAGATTTGAGGTTAATTTGCTTC
* * * **** * *
302015 CACTACACTTCTGTGGAACCTGGAT-TGACTTGAAAAGAATCTG-TTT
1 CACTACTCTTCTGT-GAA----GATCAGATTTGAGGTTAATTTGCTTC
*
302061 CACTACTCTTCTATGAAGATCAGATTTGAGGTTAATTTGCTTC
1 CACTACTCTTCTGTGAAGATCAGATTTGAGGTTAATTTGCTTC
* *
302104 CACTACTTTTCTGTGGAGATC
1 CACTACTCTTCTGTGAAGATC
302125 TTACAAATGG
Statistics
Matches: 258, Mismatches: 93, Indels: 54
0.64 0.23 0.13
Matches are distributed among these distances:
41 3 0.01
42 35 0.14
43 83 0.32
44 16 0.06
45 8 0.03
46 58 0.22
47 48 0.19
48 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (43 bp):
CACTACTCTTCTGTGAAGATCAGATTTGAGGTTAATTTGCTTC
Found at i:302248 original size:20 final size:20
Alignment explanation
Indices: 302225--302294 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
302215 ACCTGAAGGA
*
302225 TTTAGAAATGACCCGGAGGC
1 TTTACAAATGACCCGGAGGC
*
302245 TTTACAAATGATCCGGAGGC
1 TTTACAAATGACCCGGAGGC
*
302265 TTTACAAATGACCCGAAGGC
1 TTTACAAATGACCCGGAGGC
302285 TTTACAAATG
1 TTTACAAATG
302295 TGTGAGAGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (20 bp):
TTTACAAATGACCCGGAGGC
Found at i:310508 original size:146 final size:146
Alignment explanation
Indices: 310239--310520 Score: 555
Period size: 146 Copynumber: 1.9 Consensus size: 146
310229 CCAAATCCGA
310239 CTTTAGTTTCCTCTAAAAAGCCTTATAATCTCGTAGATGTGAAGAAATACCTTCGGTATTTCGAT
1 CTTTAGTTTCCTCTAAAAAGCCTTATAATCTCGTAGATGTGAAGAAATACCTTCGGTATTTCGAT
310304 TCCTCTACTGCGCGTGGATGCTCCGATATCACTCGGTAAGTCTCTTTTCCTCTTCCTTTCGTATT
66 TCCTCTACTGCGCGTGGATGCTCCGATATCACTCGGTAAGTCTCTTTTCCTCTTCCTTTCGTATT
310369 GCTTATCTCTCTCTGT
131 GCTTATCTCTCTCTGT
*
310385 CTTTGGTTTCCTCTAAAAAGCCTTATAATCTCGTAGATGTGAAGAAATACCTTCGGTATTTCGAT
1 CTTTAGTTTCCTCTAAAAAGCCTTATAATCTCGTAGATGTGAAGAAATACCTTCGGTATTTCGAT
310450 TCCTCTACTGCGCGTGGATGCTCCGATATCACTCGGTAAGTCTCTTTTCCTCTTCCTTTCGTATT
66 TCCTCTACTGCGCGTGGATGCTCCGATATCACTCGGTAAGTCTCTTTTCCTCTTCCTTTCGTATT
310515 GCTTAT
131 GCTTAT
310521 TGTGTATCTC
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 135 1.00
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (146 bp):
CTTTAGTTTCCTCTAAAAAGCCTTATAATCTCGTAGATGTGAAGAAATACCTTCGGTATTTCGAT
TCCTCTACTGCGCGTGGATGCTCCGATATCACTCGGTAAGTCTCTTTTCCTCTTCCTTTCGTATT
GCTTATCTCTCTCTGT
Found at i:310995 original size:3 final size:3
Alignment explanation
Indices: 310987--311013 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
310977 GCTTTGTAAA
310987 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
311014 ATAATAAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:312684 original size:21 final size:19
Alignment explanation
Indices: 312650--312689 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
312640 TCCATAGTTA
312650 TTTTTTTATATTATGTGTAT
1 TTTTTTTATATTATG-GTAT
*
312670 TTTTATTTATTTTATGGTAT
1 TTTT-TTTATATTATGGTAT
312690 AAGAATACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (19 bp):
TTTTTTTATATTATGGTAT
Found at i:315931 original size:20 final size:20
Alignment explanation
Indices: 315906--315948 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
315896 ATCCATAGTT
315906 TATTTTT-TTTATATTATGTG
1 TATTTTTATTTATATTATG-G
*
315926 TATTTTTATTTATTTTATGG
1 TATTTTTATTTATATTATGG
315946 TAT
1 TAT
315949 AAGAATACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (20 bp):
TATTTTTATTTATATTATGG
Found at i:319310 original size:139 final size:138
Alignment explanation
Indices: 319148--319675 Score: 630
Period size: 139 Copynumber: 3.8 Consensus size: 138
319138 ATTTAGGCAA
* * * * * * * *
319148 AATTTTGATTTGGTCCTCACTTTTATGCCCAAGATTTCATTTTAATTATACGATCCAATAATTTG
1 AATTTTTATTTGATCCTCGCTTTTATGCCCGAGGTTCCATTTTAATTATTCGATCCAATAATTTA
* *
319213 TTAAAATTGGTTAGGATTAATAATTGGAGCCTTCATTTTAGGTCTAATTTCACTTTAGTTCTTTA
66 TTAAAATTGATTAGGATTAAT-ATTAGAGCCTTCATTTTAGGTCTAATTTCACTTTAGTTCTTTA
319278 ATTTAGGTG
130 ATTTAGGTG
* * * * * *
319287 AATTTTTGTTTGGTCCTCGCTTTTATACCTGAGGTTCCATTTTAATTATTCGATTCAATAA-ATA
1 AATTTTTATTTGATCCTCGCTTTTATGCCCGAGGTTCCATTTTAATTATTCGATCCAATAATTTA
* * * *
319351 TCAAAATTGATTAGGATTAATATTAGAGTCTTCATTGTAGGT-TAATTTTACTTTA-TTCCTTTA
66 TTAAAATTGATTAGGATTAATATTAGAGCCTTCATTTTAGGTCTAATTTCACTTTAGTT-CTTTA
*
319414 ATTTAGGATT
130 ATTTAGG-TG
** ** * * *
319424 TTTTTTTAATTTGATCCTCGCTTTTATGCATGAGGTTCCATCTTAATTATTCAATCCAATAATTG
1 AATTTTT-ATTTGATCCTCGCTTTTATGCCCGAGGTTCCATTTTAATTATTCGATCCAATAATTT
* * **
319489 GTTAAAATTGATTAGGATTAATATTAAAGCCTTCACCTTAGGTCTAATTTCACTTTAGTTCTTTA
65 ATTAAAATTGATTAGGATTAATATTAGAGCCTTCATTTTAGGTCTAATTTCACTTTAGTTCTTTA
319554 ATTTAGGTG
130 ATTTAGGTG
* * * *
319563 AATTTTTTATTTGATCCTCGCTTTTATGCCCGAGGTTCTATTTTAATTATTTGATTCAATAAATT
1 AA-TTTTTATTTGATCCTCGCTTTTATGCCCGAGGTTCCATTTTAATTATTCGATCCAATAATTT
* * * *
319628 ATTAAAATTGGTTAGAATTAATATTAGAGCCTACATTTTAGGTTTAAT
65 ATTAAAATTGATTAGGATTAATATTAGAGCCTTCATTTTAGGTCTAAT
319676 CCTTTAGGTT
Statistics
Matches: 324, Mismatches: 58, Indels: 14
0.82 0.15 0.04
Matches are distributed among these distances:
135 2 0.01
136 24 0.07
137 24 0.07
138 67 0.21
139 176 0.54
140 29 0.09
141 2 0.01
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.46
Consensus pattern (138 bp):
AATTTTTATTTGATCCTCGCTTTTATGCCCGAGGTTCCATTTTAATTATTCGATCCAATAATTTA
TTAAAATTGATTAGGATTAATATTAGAGCCTTCATTTTAGGTCTAATTTCACTTTAGTTCTTTAA
TTTAGGTG
Found at i:320479 original size:224 final size:224
Alignment explanation
Indices: 320089--320540 Score: 870
Period size: 224 Copynumber: 2.0 Consensus size: 224
320079 ACATAGGGTA
320089 TCAATTATATATACCAATTTTTTGGGCGTTTGTGGGGGTGCTATTCCTTCCCCCACGTATAACTG
1 TCAATTATATATACCAATTTTTTGGGCGTTTGTGGGGGTGCTATTCCTTCCCCCACGTATAACTG
320154 ACTCTCGAACCGATTTTTGATTTTGCAGATCAAAACATTGATATTTTTAGTAAAATAAAATGTTC
66 ACTCTCGAACCGATTTTTGATTTTGCAGATCAAAACATTGATATTTTTAGTAAAATAAAATGTTC
320219 TATTAAAATACCCGATTTTAGATGTTTCAATCTCACCTTAAAAACAATTGGTGGCAACTCCCATC
131 TATTAAAATACCCGATTTTAGATGTTTCAATCTCACCTTAAAAACAATTGGTGGCAACTCCCATC
*
320284 TTTTCACAAACGTTTTTCAAAAACCATTG
196 TTTTCACAAACGATTTTCAAAAACCATTG
*
320313 TCAATTATATATACCAATTTTTTGGGCGTTTGTGGGGGTGCTATTCCTTCCCCCACGTGTAACTG
1 TCAATTATATATACCAATTTTTTGGGCGTTTGTGGGGGTGCTATTCCTTCCCCCACGTATAACTG
320378 ACTCTCGAAACCGATTTTTGATTTTGCAGATCAAAACATTGATATTTTTAGTAAAATAAAATGTT
66 ACTCTCG-AACCGATTTTTGATTTTGCAGATCAAAACATTGATATTTTTAGTAAAATAAAATGTT
320443 CTATTAAAATACCCGATTTTAGATGTTT-AATCTCACCTTAAAAACAATTGGTGGCAACTCCCAT
130 CTATTAAAATACCCGATTTTAGATGTTTCAATCTCACCTTAAAAACAATTGGTGGCAACTCCCAT
320507 CTTTTCACAAACGATTTTCAAAAACCATTG
195 CTTTTCACAAACGATTTTCAAAAACCATTG
320537 TCAA
1 TCAA
320541 GCACGCCCCG
Statistics
Matches: 225, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
224 140 0.62
225 85 0.38
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (224 bp):
TCAATTATATATACCAATTTTTTGGGCGTTTGTGGGGGTGCTATTCCTTCCCCCACGTATAACTG
ACTCTCGAACCGATTTTTGATTTTGCAGATCAAAACATTGATATTTTTAGTAAAATAAAATGTTC
TATTAAAATACCCGATTTTAGATGTTTCAATCTCACCTTAAAAACAATTGGTGGCAACTCCCATC
TTTTCACAAACGATTTTCAAAAACCATTG
Found at i:324964 original size:2 final size:2
Alignment explanation
Indices: 324957--324997 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
324947 AAACTCCTAT
324957 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
324998 TAAAAACTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:325038 original size:3 final size:3
Alignment explanation
Indices: 325032--325094 Score: 87
Period size: 3 Copynumber: 21.7 Consensus size: 3
325022 TTCATTTGAA
*
325032 TAT TAT T-T ATAT T-T TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
325076 TAT TAT TA- TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
325095 AATAATTTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
2 5 0.09
3 48 0.89
4 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:325593 original size:12 final size:12
Alignment explanation
Indices: 325562--325603 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
325552 CCAAAGATTG
* *
325562 AAGCAAAACACC
1 AAGCAAACCACA
325574 AA-CAAACCACA
1 AAGCAAACCACA
325585 AAGCAAACCACA
1 AAGCAAACCACA
*
325597 AAACAAA
1 AAGCAAA
325604 AAGAGAAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.64, C:0.31, G:0.05, T:0.00
Consensus pattern (12 bp):
AAGCAAACCACA
Found at i:328760 original size:2 final size:2
Alignment explanation
Indices: 328753--328809 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
328743 TCAATTATTA
328753 AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
328794 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
328810 TAAAAACTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:345895 original size:11 final size:11
Alignment explanation
Indices: 345881--345905 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
345871 AATAATAATG
345881 AAATATAAAAT
1 AAATATAAAAT
345892 AAATATAAAAT
1 AAATATAAAAT
345903 AAA
1 AAA
345906 GTATGTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAATATAAAAT
Found at i:346206 original size:102 final size:97
Alignment explanation
Indices: 346077--346288 Score: 361
Period size: 102 Copynumber: 2.1 Consensus size: 97
346067 GAAAATATCA
346077 AAAGTCAAATTCTGAAGTAATAATAAAAATTTATCAAAAGACAACAATAATATCATAGCAAAAAA
1 AAAGTCAAATTCTGAAGTAATAATAAAAATTTATCAAAAGACAACAATAATATCATAGC--AAAA
346142 AAACAATGAGATATCATACTATAATTATATATCAATT
64 AAACAATGAGATATCATACTAT-A-T-TATATCAATT
*
346179 AAAGTCAAATTCTGAAGTAATAATAAAAATTTATCAAAAGACAACAATAATATCGTAGCAAAAAA
1 AAAGTCAAATTCTGAAGTAATAATAAAAATTTATCAAAAGACAACAATAATATCATAGCAAAAAA
*
346244 ACAATTAGATATCATACTATATTATATCAATT
66 ACAATGAGATATCATACTATATTATATCAATT
346276 AAAGTCAAATTCT
1 AAAGTCAAATTCT
346289 TATATTATAA
Statistics
Matches: 108, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
97 23 0.21
98 1 0.01
99 1 0.01
100 25 0.23
102 58 0.54
ACGTcount: A:0.53, C:0.11, G:0.07, T:0.28
Consensus pattern (97 bp):
AAAGTCAAATTCTGAAGTAATAATAAAAATTTATCAAAAGACAACAATAATATCATAGCAAAAAA
ACAATGAGATATCATACTATATTATATCAATT
Found at i:347795 original size:41 final size:41
Alignment explanation
Indices: 347707--347801 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
347697 AATTGATACT
* * * *
347707 TTAGCGGCGTTTGTTGTAAAAACGCTGCAATAGATTTGACA
1 TTAGCGGCGTTTGTTGTAAAAACGCCGCAATAGAGTGGAAA
*
347748 TATAGCGGCGTTT-TT-TAACAAACTCCGCAATAGAGTGGTAAA
1 T-TAGCGGCGTTTGTTGTAA-AAACGCCGCAATAGAGTGG-AAA
347790 TTAGCGGCGTTT
1 TTAGCGGCGTTT
347802 ATACCACAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
40 3 0.07
41 29 0.63
42 14 0.30
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (41 bp):
TTAGCGGCGTTTGTTGTAAAAACGCCGCAATAGAGTGGAAA
Found at i:347822 original size:42 final size:40
Alignment explanation
Indices: 347765--347904 Score: 137
Period size: 42 Copynumber: 3.4 Consensus size: 40
347755 GCGTTTTTTA
347765 ACAAACTCCGCAATAGAGTGGTAAATTAGCGGCGTTTATACC
1 ACAAACT-CGCAATAGA-TGGTAAATTAGCGGCGTTTATACC
* *
347807 ACAAACGTCGCAATAGAT--TAACATATAGTGGCATTT-TAGCC
1 ACAAAC-TCGCAATAGATGGTAA-AT-TAGCGGCGTTTATA-CC
*
347848 A-AAAC-CGCAATAAATCGGTAAATTAGCGGCGTTTATACC
1 ACAAACTCGCAATAGAT-GGTAAATTAGCGGCGTTTATACC
*
347887 ACAAACGCCGCAATAGAT
1 ACAAAC-TCGCAATAGAT
347905 TACACATATA
Statistics
Matches: 81, Mismatches: 6, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
38 9 0.11
39 15 0.19
40 16 0.20
41 16 0.20
42 24 0.30
43 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (40 bp):
ACAAACTCGCAATAGATGGTAAATTAGCGGCGTTTATACC
Found at i:347925 original size:42 final size:41
Alignment explanation
Indices: 347726--347925 Score: 132
Period size: 41 Copynumber: 4.9 Consensus size: 41
347716 TTTGTTGTAA
* * * * *
347726 AAACGCTGCAATAGATTTGACATATAGCGGCGTTTTTTA--AC
1 AAACGCCGCAATAGA-TTAACATATAGTGGC-ATTTATACCAC
* * *
347767 AAACTCCGCAATAGAGTGGTAA-AT-TAGCGGCGTTTATACCAC
1 AAACGCCGCAATAGA-T--TAACATATAGTGGCATTTATACCAC
*
347809 AAACGTCGCAATAGATTAACATATAGTGGCATTT-TAGCCA-
1 AAACGCCGCAATAGATTAACATATAGTGGCATTTATA-CCAC
* * *
347849 AAA--CCGCAATAAATCGGTAA-AT-TAGCGGCGTTTATACCAC
1 AAACGCCGCAATAGAT---TAACATATAGTGGCATTTATACCAC
347889 AAACGCCGCAATAGATTACACATATAGTGGCATTTAT
1 AAACGCCGCAATAGATTA-ACATATAGTGGCATTTAT
347926 TCTTAAAACG
Statistics
Matches: 125, Mismatches: 17, Indels: 33
0.71 0.10 0.19
Matches are distributed among these distances:
38 9 0.07
39 17 0.14
40 20 0.16
41 39 0.31
42 38 0.30
43 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (41 bp):
AAACGCCGCAATAGATTAACATATAGTGGCATTTATACCAC
Found at i:347987 original size:41 final size:41
Alignment explanation
Indices: 347930--348041 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 41
347920 ATTTATTCTT
* * * *
347930 AAAACGTCGGAATAGTGATAATAAATAGTGGCATTTCTAGA
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCATTTCTAGA
* * *
347971 TAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTAGA
1 AAAACGCCGCAATAGTGTTAATCAATAGTGGCATTTCTAGA
* * *
348012 AAAATGCCGTAATAGTTTTAATCAATAGTG
1 AAAACGCCGCAATAGTGTTAATCAATAGTG
348042 TAATCAAGTG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (41 bp):
AAAACGCCGCAATAGTGTTAATCAATAGTGGCATTTCTAGA
Found at i:349615 original size:41 final size:40
Alignment explanation
Indices: 349564--349826 Score: 285
Period size: 41 Copynumber: 6.4 Consensus size: 40
349554 TTTTTTTTAC
* *
349564 AAACGCCGCTATATACTAGTACTTTAGTGGCGTTTCTATAT
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTT-TATAT
* * * * *
349605 ACACACCGCTATATACTCATACTTTAGTGGCGTTTTGAATCT
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTT--ATAT
*
349647 AAACGCCGCTATAAACTCGTACTTTAGTGGCGTTTTGA-AT
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTT-ATAT
* ***
349687 GAAAACGCCGCTAAAGACTCGTACTTTAGTAGAATTTTTATAT
1 --AAACGCCGCTATAGACTCGTACTTTAGT-GGCGTTTTATAT
*
349730 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTTATAC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCG-TTTTATAT
** *
349771 AAATACCGCTATAGACTCGTACTTTAGTGGCGCTTTTAGAT
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCG-TTTTATAT
*
349812 AAACGCCGCAATAGA
1 AAACGCCGCTATAGA
349827 TATAATATTT
Statistics
Matches: 186, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
40 3 0.02
41 114 0.61
42 62 0.33
43 7 0.04
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (40 bp):
AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTATAT
Found at i:349655 original size:83 final size:81
Alignment explanation
Indices: 349564--349820 Score: 293
Period size: 83 Copynumber: 3.1 Consensus size: 81
349554 TTTTTTTTAC
* * * * *
349564 AAACGCCGCTATATACTAGTACTTTAGTGGCGTTTCTATATACACACCGCTATATACTCATACTT
1 AAACGCCGCTATAAACTCGTACTTTAGTGGCGTTT-TATATAAACACCGCTATAGACTCGTACTT
*
349629 TAGTGGCGTTTTGAATCT
65 TAGTGGCGTTTT-AATAT
* *
349647 AAACGCCGCTATAAACTCGTACTTTAGTGGCGTTTTGA-ATGAAAACGCCGCTAAAGACTCGTAC
1 AAACGCCGCTATAAACTCGTACTTTAGTGGCGTTTT-ATAT--AAACACCGCTATAGACTCGTAC
* ** *
349711 TTTAGTAGAATTTTTATAT
63 TTTAGTGGCGTTTTAATAT
* * *
349730 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAATACCGCTATAGACTCGTACTT
1 AAACGCCGCTATAAACTCGTACTTTAGTGGCG-TTTTATATAAACACCGCTATAGACTCGTACTT
*
349795 TAGTGGCGCTTTT-AGAT
65 TAGTGGCG-TTTTAATAT
349812 AAACGCCGC
1 AAACGCCGC
349821 AATAGATATA
Statistics
Matches: 147, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
82 41 0.28
83 73 0.50
84 33 0.22
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (81 bp):
AAACGCCGCTATAAACTCGTACTTTAGTGGCGTTTTATATAAACACCGCTATAGACTCGTACTTT
AGTGGCGTTTTAATAT
Found at i:350509 original size:13 final size:13
Alignment explanation
Indices: 350491--350516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
350481 CAGTTGAGCC
350491 AAGTTACATTGTT
1 AAGTTACATTGTT
350504 AAGTTACATTGTT
1 AAGTTACATTGTT
350517 TTTCAATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
AAGTTACATTGTT
Found at i:352205 original size:25 final size:26
Alignment explanation
Indices: 352153--352205 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
352143 TATGCTAGGA
*
352153 TTCAACATAGAATTTTGCCATTGCAT
1 TTCAACATAGAATTTTGCCATTACAT
* * *
352179 TTCAATATTGAATTTT-CCATTATAT
1 TTCAACATAGAATTTTGCCATTACAT
352204 TT
1 TT
352206 TCAAATTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.30, C:0.15, G:0.08, T:0.47
Consensus pattern (26 bp):
TTCAACATAGAATTTTGCCATTACAT
Found at i:353422 original size:2 final size:2
Alignment explanation
Indices: 353417--353448 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
353407 AAACATTATG
353417 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
353449 ATAACGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:353502 original size:21 final size:21
Alignment explanation
Indices: 353441--353503 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
353431 ATATATATAT
* * * *
353441 ATAATATAATAACGAAAAAAA
1 ATAATGTAATAAAGTAAAATA
*
353462 ATAATTTAATAAAGTAAAATA
1 ATAATGTAATAAAGTAAAATA
353483 ATAATGTAATAAA-TATAAATA
1 ATAATGTAATAAAGTA-AAATA
353504 CATGAAAACA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 2 0.06
21 34 0.94
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (21 bp):
ATAATGTAATAAAGTAAAATA
Found at i:353613 original size:13 final size:11
Alignment explanation
Indices: 353573--353615 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 11
353563 GCATATGTTT
353573 AAAATAAAAATA
1 AAAATAAAAA-A
353585 AAAATAAAAAA
1 AAAATAAAAAA
353596 TAAAATACAATAAA
1 -AAAATA-AA-AAA
353610 AAAATA
1 AAAATA
353616 TACATATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.04
12 16 0.57
13 8 0.29
14 3 0.11
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAA
Found at i:353685 original size:51 final size:51
Alignment explanation
Indices: 353627--353737 Score: 213
Period size: 51 Copynumber: 2.2 Consensus size: 51
353617 ACATATAATG
353627 ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
1 ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
*
353678 ATAATAATAGTAGCAAAAGAGAAAAATATATTTATATACGTTAATAGTAAA
1 ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
353729 ATAATAATA
1 ATAATAATA
353738 AATATAATAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.56, C:0.05, G:0.11, T:0.29
Consensus pattern (51 bp):
ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
Found at i:354296 original size:37 final size:36
Alignment explanation
Indices: 354246--354329 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 36
354236 GTGCTTGTGG
* *
354246 ATCCTATCTTTAGGATTTTAAAACATAGCAAAATTCT
1 ATCCTATTTTTAGGA-GTTAAAACATAGCAAAATTCT
* * * *
354283 ATCCTATTTTTAGGAGTTGAATCCTAGCAGAATTCT
1 ATCCTATTTTTAGGAGTTAAAACATAGCAAAATTCT
354319 ATCCTATTTTT
1 ATCCTATTTTT
354330 GAGAGTTTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
36 27 0.66
37 14 0.34
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (36 bp):
ATCCTATTTTTAGGAGTTAAAACATAGCAAAATTCT
Found at i:354318 original size:36 final size:37
Alignment explanation
Indices: 354271--354346 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 37
354261 TTTTAAAACA
354271 TAGCAAAATTCTATCCTATTTTT-AGGAG-TTGAATCC
1 TAGCAAAATTCTATCCTATTTTTGA-GAGTTTGAATCC
*
354307 TAGCAGAATTCTATCCTATTTTTGAGAGTTTGAATCC
1 TAGCAAAATTCTATCCTATTTTTGAGAGTTTGAATCC
354344 TAG
1 TAG
354347 TAGGACGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
36 25 0.68
37 12 0.32
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (37 bp):
TAGCAAAATTCTATCCTATTTTTGAGAGTTTGAATCC
Found at i:355118 original size:106 final size:108
Alignment explanation
Indices: 354813--355436 Score: 569
Period size: 109 Copynumber: 5.9 Consensus size: 108
354803 GTTCCGAGTC
* * ** * **
354813 CAATATCCTCCG-CTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTGTTTGATGACAGTCAG
1 CAATATCCTCCGTC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
* * * *
354877 CCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTCGAGT-C-
65 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* ** * * * * *
354919 TAATATATTTCG-CTGTGAAGTTGAAATTGACTCTG-AA---CGAAA-T-CTTGTTGACAATCAG
1 CAATATCCTCCGTC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
354977 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-C-
65 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* * * *
355019 CAATATCCTTCG-CTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACAACCAG
1 CAATATCCTCCGTC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAG
* *
355083 CTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCA
65 CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCA
* * * ** * * **
355128 CGATATCCTCCGTCGTGGAGTTGAAA-TCGCGGATGAAACT-GAAAAGTTGTTCATTGACAACCA
1 CAATATCCTCCGTCGTGAAGTTGAAATTGGC-TCTGAAATTGGGAAA-TTGTTTGTTGACAACCA
* * *
355191 GCCGTCCCTTCGTTGTGAAGTTGGACTTGTGTTTTCTCGGGTAGCA
64 GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCA
* * * * * * *
355237 CGATATCCTCCGTCGTGGAGTTGAAATCGGTTCTGGAATTGGGAAGTTGTTCGTTGACAACCAGC
1 CAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGC
* * *
355302 TGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGGGTAGCA
66 CGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GCA
* * * * * * * *
355346 CGATATCCTCCGTCGTGGATTTGAAATCGGTTCCGAAATTGGGAAATTG-TTGTTGGCAACCAGA
1 CAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGC
355410 CGTCCCTTCGTTGTGAAGTTGAACTTG
66 CGTCCCTTCGTTGTGAAGTTGAACTTG
355437 ACTCTAGCTA
Statistics
Matches: 442, Mismatches: 62, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
100 81 0.18
101 3 0.01
102 4 0.01
104 3 0.01
105 3 0.01
106 81 0.18
108 47 0.11
109 215 0.49
110 5 0.01
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (108 bp):
CAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGC
CGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
Found at i:356095 original size:67 final size:67
Alignment explanation
Indices: 356015--356173 Score: 214
Period size: 67 Copynumber: 2.4 Consensus size: 67
356005 GAAACGAAAT
* *
356015 TTTGTTTTAAGGGAGATA-AAT-TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGAC
1 TTTGTTTCAAGGGA-A-ACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
356078 AAAA
64 AAAA
* * *
356082 TTTGTTTCGAGGGAAACAATCTCAAAGGTTTTGTGTTTTAAGAGAAACTGTCTCAAGGGAGACAA
1 TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
356147 AA
66 AA
* **
356149 TTTATTTCAAGGGAAATTATCTCAA
1 TTTGTTTCAAGGGAAACAATCTCAA
356174 GAGAGACGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 4 0.05
67 76 0.94
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (67 bp):
TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAA
AA
Found at i:356180 original size:36 final size:36
Alignment explanation
Indices: 356132--356303 Score: 114
Period size: 36 Copynumber: 4.9 Consensus size: 36
356122 AGAGAAACTG
*
356132 TCTCAAGGGAGACAAAATTTATTTCAAGGGAAATTA
1 TCTCAAGAGAGACAAAATTTATTTCAAGGGAAATTA
* *
356168 TCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGT-
1 TCTCAAGAGAGACAAAATTTATTTCAAGGGAAAT-TA
* * * *
356204 TTTC-A-A-TG------TTTATGTTTC-AGGAGAAACTG
1 TCTCAAGAGAGACAAAATTTA--TTTCAAGG-GAAATTA
* * *
356233 TCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTA
1 TCTCAAGAGAGACAAAA-TTTATTTCAAGGGAAATTA
* *
356270 TCTCATGAGAGACAAAATTCATTTCAAGGGAAAT
1 TCTCAAGAGAGACAAAATTTATTTCAAGGGAAAT
356304 GTTTCCAATG
Statistics
Matches: 103, Mismatches: 17, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
27 3 0.03
28 4 0.04
29 11 0.11
30 1 0.01
32 1 0.01
33 1 0.01
34 1 0.01
35 1 0.01
36 48 0.47
37 26 0.25
38 3 0.03
39 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (36 bp):
TCTCAAGAGAGACAAAATTTATTTCAAGGGAAATTA
Found at i:356267 original size:37 final size:37
Alignment explanation
Indices: 356216--356524 Score: 214
Period size: 37 Copynumber: 8.9 Consensus size: 37
356206 TCAATGTTTA
*
356216 TGTTTC-AGGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGG-GAAACTGTCTCAAGAGAGACAAAATTT
* *
356253 TGTTTCAAGGGAAACTATCTCATGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * **
356289 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* * *
356317 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
356355 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * * *
356391 CATTTCAA-GGAAAATGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * *
356419 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
356457 TGTTTCAAGGGAAACTGTCTAAAGAGAGAC-AAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
356493 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
356525 TGGTGAGCAC
Statistics
Matches: 205, Mismatches: 41, Indels: 52
0.69 0.14 0.17
Matches are distributed among these distances:
27 3 0.01
28 3 0.01
29 20 0.10
30 12 0.06
32 1 0.00
33 1 0.00
34 1 0.00
35 11 0.05
36 58 0.28
37 84 0.41
38 11 0.05
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:356291 original size:102 final size:102
Alignment explanation
Indices: 356115--356506 Score: 633
Period size: 102 Copynumber: 3.9 Consensus size: 102
356105 AAAGGTTTTG
* * * *
356115 TGTTTTAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTATTTCAAGGGAAATTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
356179 ACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
356216 TGTTTCAGGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCATGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
356281 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
356318 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* *
356383 ACAAAACTCATTTCAAGGAAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
356420 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTGTCTAAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
* **
356485 ACAAAGTTTGTTTCAAGGGAAA
66 ACAAAATTCATTTCAAGGGAAA
356507 CTGTCTCAAG
Statistics
Matches: 270, Mismatches: 20, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
101 32 0.12
102 238 0.88
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:356399 original size:204 final size:205
Alignment explanation
Indices: 356048--356507 Score: 681
Period size: 204 Copynumber: 2.2 Consensus size: 205
356038 AAAGATTTTG
* * *
356048 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATTTGTTTCGAGGGAAACAATCTCAAAGGTTT
1 TGTTTCAAGGGAAACTGTCTCATGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTT
* * * *
356113 TGTGTTTTAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAATTATCTCAAGAGA
66 TATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTATTTCAAGGGAAACTATCTCAAGAGA
* * * *
356178 GACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAGGAGAAACTGTCTCAAGGGA
131 GACAAAACTCATTTCAAGGAAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGA
*
356243 GACAAAATTT
196 GAAAAAATTT
* ** ** * * *
356253 TGTTTCAAGGGAAACTATCTCATGAGAGACAAAATTCATTTCAAGGGAAA-TGTTTCCAATG-TT
1 TGTTTCAAGGGAAACTGTCTCATGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTT
*
356316 TATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGGGAAACTATCTCAAGAG
66 TATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAA-TTTATTTCAAGGGAAACTATCTCAAGAG
356381 AGACAAAACTCATTTCAAGGAAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGG
130 AGACAAAACTCATTTCAAGGAAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGG
356446 AGAAAAAATTT
195 AGAAAAAATTT
* * *
356457 TGTTTCAAGGGAAACTGTCTAAAGAGAGACAAAGTTTGTTTCAAGGGAAAC
1 TGTTTCAAGGGAAACTGTCTCATGAGAGACAAAATTTGTTTCAAGGGAAAC
356508 TGTCTCAAGA
Statistics
Matches: 226, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
203 35 0.15
204 147 0.65
205 44 0.19
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (205 bp):
TGTTTCAAGGGAAACTGTCTCATGAGAGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTT
TATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTATTTCAAGGGAAACTATCTCAAGAGA
GACAAAACTCATTTCAAGGAAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGA
GAAAAAATTT
Found at i:356502 original size:36 final size:36
Alignment explanation
Indices: 356420--356524 Score: 156
Period size: 36 Copynumber: 2.9 Consensus size: 36
356410 TCAATGTTTA
* * * *
356420 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAG-ACAAAGTT
*
356457 TGTTTCAAGGGAAACTGTCTAAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
356493 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
356525 TGGTGAGCAC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
36 37 0.60
37 25 0.40
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
Found at i:357404 original size:22 final size:22
Alignment explanation
Indices: 357379--357429 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
357369 TTGTGTTTGG
357379 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
357401 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
357423 TCAAAGG
1 TCAAAGG
357430 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:358072 original size:12 final size:11
Alignment explanation
Indices: 358045--358093 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
358035 CCCTTTTTTA
*
358045 TTTTTGTTCTT
1 TTTTTTTTCTT
* *
358056 GTTTTTTCCTT
1 TTTTTTTTCTT
358067 TTTTTTCTTCTT
1 TTTTTT-TTCTT
358079 TTCTTTTTTCTT
1 TT-TTTTTTCTT
358091 TTT
1 TTT
358094 GCCCTTTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 14 0.45
12 13 0.42
13 4 0.13
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:358077 original size:23 final size:24
Alignment explanation
Indices: 358045--358093 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
358035 CCCTTTTTTA
*
358045 TTTTTGTTCTTGT-TTTTTCCTTT
1 TTTTTCTTCTTGTCTTTTTCCTTT
* *
358068 TTTTTCTTCTTTTCTTTTTTCTTT
1 TTTTTCTTCTTGTCTTTTTCCTTT
358092 TT
1 TT
358094 GCCCTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (24 bp):
TTTTTCTTCTTGTCTTTTTCCTTT
Found at i:361453 original size:21 final size:20
Alignment explanation
Indices: 361421--361460 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
361411 ATAATAAATA
*
361421 TAATAACGAAAAAAATAATT
1 TAATAAAGAAAAAAATAATT
*
361441 TAATAAAGTAAAATAATAAT
1 TAATAAAG-AAAAAAATAAT
361461 AATGTAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
TAATAAAGAAAAAAATAATT
Found at i:361462 original size:16 final size:16
Alignment explanation
Indices: 361441--361478 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
361431 AAAAATAATT
361441 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
361457 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
361473 T-ATAAA
1 TAATAAA
361479 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:361571 original size:15 final size:16
Alignment explanation
Indices: 361551--361583 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
361541 TATGTTTAAA
361551 AAAAAAAAATACA-AT
1 AAAAAAAAATACATAT
*
361566 AAAAAAATATACATAT
1 AAAAAAAAATACATAT
361582 AA
1 AA
361584 TGATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAAAAATACATAT
Found at i:361640 original size:48 final size:51
Alignment explanation
Indices: 361586--361693 Score: 186
Period size: 51 Copynumber: 2.2 Consensus size: 51
361576 ACATATAATG
361586 ATAATAATAGTAGCAAAAGAG-AAAACATA-TT-TATACGTTAATAGTAAA
1 ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
*
361634 ATAATAATAGTAGCAAAAGAGAAAAATATATTTATATACGTTAATAGTAAA
1 ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
361685 ATAATAATA
1 ATAATAATA
361694 AATATAATAG
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
48 21 0.38
49 7 0.12
50 2 0.04
51 26 0.46
ACGTcount: A:0.56, C:0.05, G:0.11, T:0.29
Consensus pattern (51 bp):
ATAATAATAGTAGCAAAAGAGAAAAACATATTTATATACGTTAATAGTAAA
Found at i:362281 original size:36 final size:37
Alignment explanation
Indices: 362209--362309 Score: 134
Period size: 36 Copynumber: 2.8 Consensus size: 37
362199 GTGCTTGTGG
* * * *
362209 ATCCTATCTTTAGGAGTTTAAAACATAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
*
362246 ATCCTATTTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
362282 ATCCTATTTTT-GAGAGTTTGAATCCTAG
1 ATCCTATTTTTAG-GAGTTTGAATCCTAG
362310 TAGGACGAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 1 0.02
36 30 0.53
37 26 0.46
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
Found at i:363591 original size:21 final size:21
Alignment explanation
Indices: 363562--363611 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
363552 AGCAGCAGCG
363562 GAAGCAGCGACAACACAGAGA
1 GAAGCAGCGACAACACAGAGA
* * *
363583 GAAGTAGCGGCAGCACAGAGA
1 GAAGCAGCGACAACACAGAGA
363604 GAAGCAGC
1 GAAGCAGC
363612 ATATCAGCAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.22, G:0.34, T:0.02
Consensus pattern (21 bp):
GAAGCAGCGACAACACAGAGA
Found at i:364083 original size:43 final size:43
Alignment explanation
Indices: 364036--364268 Score: 148
Period size: 43 Copynumber: 5.4 Consensus size: 43
364026 AAACGCCTCA
* * *
364036 AAACATCAATACCTACTGCGGCGTTTGTGAAAAAAATGCTGCT
1 AAACATCAATACCTATTGCGGCGTTTGTCAAAAAAACGCTGCT
* * **
364079 AAACATC-ATAACCTATTACGACGTTTGTCTGAAAAACGCTGCT
1 AAACATCAAT-ACCTATTGCGGCGTTTGTCAAAAAAACGCTGCT
* * * * * **
364122 AAATATTAACACCTATTGCGGCGTTT-TTATAACAAACGCCACT
1 AAACATCAATACCTATTGCGGCGTTTGTCA-AAAAAACGCTGCT
* * * * * * * *
364165 AAATATCAACACATATTGTGGCGTTT-TTATGACAAACGCCGCT
1 AAACATCAATACCTATTGCGGCGTTTGTCA-AAAAAACGCTGCT
* * * * * *
364208 AAATATCAACACTTATTGCGGCGTTTGTCACACAAACGCCGCT
1 AAACATCAATACCTATTGCGGCGTTTGTCAAAAAAACGCTGCT
* *
364251 AAATATCAATACTTATTG
1 AAACATCAATACCTATTG
364269 TGGCATTTTT
Statistics
Matches: 158, Mismatches: 28, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
42 3 0.02
43 152 0.96
44 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (43 bp):
AAACATCAATACCTATTGCGGCGTTTGTCAAAAAAACGCTGCT
Found at i:364243 original size:86 final size:86
Alignment explanation
Indices: 364112--364278 Score: 237
Period size: 86 Copynumber: 1.9 Consensus size: 86
364102 TTTGTCTGAA
* * *
364112 AAACGCTGCTAAATATTAACACCTATTGCGGCGTTTTTATAACAAACGCCACTAAATATCAACAC
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTTCATAACAAACGCCACTAAATATCAACAC
*
364177 ATATTGTGGCGTTTTTATGAC
66 ATATTGTGGCATTTTTATGAC
* * * *
364198 AAACGCCGCTAAATATCAACACTTATTGCGGCGTTTGTCA-CACAAACGCCGCTAAATATCAATA
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTT-TCATAACAAACGCCACTAAATATCAACA
*
364262 CTTATTGTGGCATTTTT
65 CATATTGTGGCATTTTT
364279 TGTGAAAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 69 0.97
87 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31
Consensus pattern (86 bp):
AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTTCATAACAAACGCCACTAAATATCAACAC
ATATTGTGGCATTTTTATGAC
Found at i:369124 original size:21 final size:21
Alignment explanation
Indices: 369100--369144 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
369090 CCTAAAGCAT
369100 CAAGGATACATGTGCATTCAG
1 CAAGGATACATGTGCATTCAG
369121 CAAGGATACATGTGCATTCAG
1 CAAGGATACATGTGCATTCAG
369142 CAA
1 CAA
369145 AGAATCACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (21 bp):
CAAGGATACATGTGCATTCAG
Found at i:369285 original size:20 final size:20
Alignment explanation
Indices: 369262--369331 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
369252 ATGAACTTTC
369262 ATTAAAAGTCGTGAATATTT
1 ATTAAAAGTCGTGAATATTT
* * *
369282 ATTAAAA-ACATGTACAAACTTT
1 ATTAAAAGTCGTG-A-ATA-TTT
369304 CATTAAAAGTCGTGAATATTT
1 -ATTAAAAGTCGTGAATATTT
369325 ATTAAAA
1 ATTAAAA
369332 ACATGTACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 3 0.08
20 15 0.38
21 5 0.13
22 5 0.13
23 8 0.21
24 3 0.08
ACGTcount: A:0.46, C:0.09, G:0.10, T:0.36
Consensus pattern (20 bp):
ATTAAAAGTCGTGAATATTT
Found at i:369303 original size:43 final size:43
Alignment explanation
Indices: 369255--369340 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
369245 CAAGAGCATG
369255 AACTTTCATTAAAAGTCGTGAATATTTATTAAAAACATGTACA
1 AACTTTCATTAAAAGTCGTGAATATTTATTAAAAACATGTACA
369298 AACTTTCATTAAAAGTCGTGAATATTTATTAAAAACATGTACA
1 AACTTTCATTAAAAGTCGTGAATATTTATTAAAAACATGTACA
369341 TTCAGAAGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (43 bp):
AACTTTCATTAAAAGTCGTGAATATTTATTAAAAACATGTACA
Found at i:370130 original size:20 final size:19
Alignment explanation
Indices: 370101--370139 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
370091 ATTGAAGTGT
*
370101 CAAAAGAAGAAAACAAAAGA
1 CAAAACAAGAAAA-AAAAGA
370121 CAAAACAAGAAAAAAAAGA
1 CAAAACAAGAAAAAAAAGA
370140 AGGAAAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.77, C:0.10, G:0.13, T:0.00
Consensus pattern (19 bp):
CAAAACAAGAAAAAAAAGA
Found at i:380557 original size:15 final size:16
Alignment explanation
Indices: 380531--380560 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
380521 CTCATTATCT
380531 GTTTTACTTTATTTAA
1 GTTTTACTTTATTTAA
380547 GTTTT-CTTTATTTA
1 GTTTTACTTTATTTA
380561 TTGTAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (16 bp):
GTTTTACTTTATTTAA
Found at i:381783 original size:19 final size:19
Alignment explanation
Indices: 381759--381808 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
381749 ACGTAATTTG
381759 TGTATCGATACATAGGTTT
1 TGTATCGATACATAGGTTT
381778 TGTATCGATACATAGGTTT
1 TGTATCGATACATAGGTTT
381797 TGTATCGATACA
1 TGTATCGATACA
381809 AACGTTAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATAGGTTT
Found at i:382917 original size:32 final size:30
Alignment explanation
Indices: 382875--382964 Score: 110
Period size: 32 Copynumber: 2.9 Consensus size: 30
382865 AGAGTCGAGG
*
382875 GTTACCTATGTCCTTCGGGACATATGGACA
1 GTTACCTATGTCCTTTGGGACATATGGACA
*
382905 GGATTACCTATGTCCTTTGGGA-AGTATGGATA
1 -G-TTACCTATGTCCTTTGGGACA-TATGGACA
* *
382937 GTTACCTATGTTCTTTGGAACATATGGA
1 GTTACCTATGTCCTTTGGGACATATGGA
382965 TAGTGGTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
30 23 0.44
31 4 0.08
32 25 0.48
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (30 bp):
GTTACCTATGTCCTTTGGGACATATGGACA
Found at i:382944 original size:30 final size:29
Alignment explanation
Indices: 382875--382968 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 29
382865 AGAGTCGAGG
* *
382875 GTTACCTATGTCCTTCGGGACATATGGACA
1 GTTACCTATGTCCTTTGGGA-ATATGGATA
382905 GGATTACCTATGTCCTTTGGGAAGTATGGATA
1 -G-TTACCTATGTCCTTTGGGAA-TATGGATA
* *
382937 GTTACCTATGTTCTTTGGAACATATGGATA
1 GTTACCTATGTCCTTTGGGA-ATATGGATA
382967 GT
1 GT
382969 GGTCCTTTGG
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
30 27 0.48
31 4 0.07
32 25 0.45
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (29 bp):
GTTACCTATGTCCTTTGGGAATATGGATA
Found at i:386319 original size:10 final size:10
Alignment explanation
Indices: 386304--386328 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
386294 TACACATCAT
386304 TTTAGTTGCA
1 TTTAGTTGCA
386314 TTTAGTTGCA
1 TTTAGTTGCA
386324 TTTAG
1 TTTAG
386329 GTTATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.20, T:0.52
Consensus pattern (10 bp):
TTTAGTTGCA
Found at i:395297 original size:20 final size:20
Alignment explanation
Indices: 395274--395314 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
395264 CATCCTTGCT
395274 ACCAAGCATCATGTGCCTTC
1 ACCAAGCATCATGTGCCTTC
* *
395294 ACCATGCATCATGTGCTTTC
1 ACCAAGCATCATGTGCCTTC
395314 A
1 A
395315 TTTTGGCACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (20 bp):
ACCAAGCATCATGTGCCTTC
Found at i:396489 original size:17 final size:17
Alignment explanation
Indices: 396467--396508 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
396457 AAACGAACGA
* *
396467 ACAACGCTACTCCTAGG
1 ACAACGATACTCATAGG
*
396484 ACAACGATGCTCATAGG
1 ACAACGATACTCATAGG
396501 ACAACGAT
1 ACAACGAT
396509 GCAATCGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.17
Consensus pattern (17 bp):
ACAACGATACTCATAGG
Found at i:397320 original size:16 final size:17
Alignment explanation
Indices: 397287--397328 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
397277 AATTTAGTCT
*
397287 TTTAATTTTATATTCTA
1 TTTAATTTGATATTCTA
397304 TTTAATTTGAT-TTCTA
1 TTTAATTTGATATTCTA
397320 TTGTAATTT
1 TT-TAATTT
397329 TTTAAATCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTAATTTGATATTCTA
Found at i:397399 original size:18 final size:18
Alignment explanation
Indices: 397353--397401 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
397343 ATTTCTTGAC
* *
397353 TCTTTT-ATACAATACTT
1 TCTTTTAATAAAATACAT
*
397370 TTTTTTAA-AAAATACAT
1 TCTTTTAATAAAATACAT
397387 TCTTTTAATAAAATA
1 TCTTTTAATAAAATA
397402 AAATTATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (18 bp):
TCTTTTAATAAAATACAT
Found at i:398724 original size:21 final size:21
Alignment explanation
Indices: 398694--398737 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
398684 TTTTGGTAAC
398694 TTACGATTTTATTGC-TGTTGT
1 TTACGATTTT-TTGCATGTTGT
* *
398715 TTACGCTTTTTTTCATGTTGT
1 TTACGATTTTTTGCATGTTGT
398736 TT
1 TT
398738 TCGTTTATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.61
Consensus pattern (21 bp):
TTACGATTTTTTGCATGTTGT
Found at i:402727 original size:22 final size:22
Alignment explanation
Indices: 402699--402757 Score: 109
Period size: 22 Copynumber: 2.7 Consensus size: 22
402689 GGGTATATTA
402699 GTCCTTCGGGACATATCCAGTG
1 GTCCTTCGGGACATATCCAGTG
*
402721 GTCCTTCGGGACGTATCCAGTG
1 GTCCTTCGGGACATATCCAGTG
402743 GTCCTTCGGGACATA
1 GTCCTTCGGGACATA
402758 ATAGTCCTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.17, C:0.27, G:0.29, T:0.27
Consensus pattern (22 bp):
GTCCTTCGGGACATATCCAGTG
Found at i:404260 original size:19 final size:18
Alignment explanation
Indices: 404236--404296 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
404226 ACTCTCTCTA
404236 ATAAAATTATAACAAAAAT
1 ATAAAATTATAA-AAAAAT
* * *
404255 ATAAAAATACAAATGAAAAA
1 ATAAAATTATAAA--AAAAT
*
404275 ATATAATTATAATAAAAAT
1 ATAAAATTATAA-AAAAAT
404294 ATA
1 ATA
404297 TTTTATAACA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
20 13 0.41
21 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (18 bp):
ATAAAATTATAAAAAAAT
Found at i:405669 original size:20 final size:20
Alignment explanation
Indices: 405644--405686 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
405634 TCTAAGAGCC
*
405644 CATTTAGAATCATATAGATG
1 CATTTAGAAGCATATAGATG
* *
405664 CATTTAGGAGCATATAGTTG
1 CATTTAGAAGCATATAGATG
405684 CAT
1 CAT
405687 GTGGTGGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (20 bp):
CATTTAGAAGCATATAGATG
Found at i:407828 original size:64 final size:63
Alignment explanation
Indices: 407760--407918 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 63
407750 TGCATTAAGA
* *
407760 GTGCATCGATGCATGAAGTGCATTCGATGTTTCA-AACAAGTCC-GAGTGCATCGATGCATGGCT
1 GTGCATCGATGCAT-AAATGCATTCGATGTTTCATAA-AA-ACCTGAGTGCATCGATGCATGG-T
407823 -T
62 AT
407824 GTGCATCGATGCATCAAAT-CATTCGATGTTTTCATAAAAACCTGAGTGCATCGATGCATGGTAT
1 GTGCATCGATGCAT-AAATGCATTCGATG-TTTCATAAAAACCTGAGTGCATCGATGCATGGTAT
*
407888 GTGCATCGATGTATATAATGCATTCGATGTT
1 GTGCATCGATGCATA-AATGCATTCGATGTT
407919 CAATTTATTC
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
63 13 0.15
64 61 0.72
65 11 0.13
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATAAATGCATTCGATGTTTCATAAAAACCTGAGTGCATCGATGCATGGTAT
Found at i:408550 original size:2 final size:2
Alignment explanation
Indices: 408543--408568 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
408533 CAAACCAAAC
408543 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
408569 TAAGATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:410192 original size:12 final size:12
Alignment explanation
Indices: 410172--410201 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
410162 CCAAACAATC
*
410172 AATGCTTGATAT
1 AATGTTTGATAT
410184 AATGTTTGATAT
1 AATGTTTGATAT
410196 AATGTT
1 AATGTT
410202 CATCCTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (12 bp):
AATGTTTGATAT
Found at i:410570 original size:21 final size:23
Alignment explanation
Indices: 410514--410595 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 23
410504 GCATGGATTT
410514 GTGCATCGATGCACATTCAATGA
1 GTGCATCGATGCACATTCAATGA
* *
410537 GTGCATCGGTGCATATTC-ATGA
1 GTGCATCGATGCACATTCAATGA
* * * *
410559 -TGTATCGATGCACATACAAAGG
1 GTGCATCGATGCACATTCAATGA
410581 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
410596 TATTTAGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 13 0.28
22 6 0.13
23 16 0.34
24 12 0.26
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (23 bp):
GTGCATCGATGCACATTCAATGA
Found at i:410572 original size:44 final size:44
Alignment explanation
Indices: 410518--410614 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 44
410508 GGATTTGTGC
* * *
410518 ATCGATGCACATTCAATGAG-TGCATCGGTGCA-TATTCATGATGT
1 ATCGATGCACATACAAAGAGATGCATCGATGCACTATTCA-G-TGT
* *
410562 ATCGATGCACATACAAAGGGATGCATCGATGCACTATTTAGTGT
1 ATCGATGCACATACAAAGAGATGCATCGATGCACTATTCAGTGT
410606 ATCGATGCA
1 ATCGATGCA
410615 TTAAGCACAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 29 0.63
45 12 0.26
46 5 0.11
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
ATCGATGCACATACAAAGAGATGCATCGATGCACTATTCAGTGT
Found at i:416515 original size:65 final size:64
Alignment explanation
Indices: 416383--416525 Score: 191
Period size: 65 Copynumber: 2.2 Consensus size: 64
416373 TGCACTAAGA
* * * * **
416383 GTGCACCGATGCATGAAGTGCATTCGATGTTTCAAACAAGCCCGAGTGTATCGATGCATGGCTT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAACAAACCCGAGTACATCGATGCATGGCTT
416447 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAA-AAACCCGAGTACATCGATGCATGG-T
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AACAAACCCGAGTACATCGATGCATGGCT
416510 AT
64 -T
416512 GTGCATCGATGCAT
1 GTGCATCGATGCAT
416526 GGTATGTGCC
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
64 27 0.39
65 41 0.59
66 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAACAAACCCGAGTACATCGATGCATGGCTT
Found at i:416520 original size:19 final size:19
Alignment explanation
Indices: 416496--416544 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
416486 AACCCGAGTA
416496 CATCGATGCATGGTATGTG
1 CATCGATGCATGGTATGTG
416515 CATCGATGCATGGTATGTG
1 CATCGATGCATGGTATGTG
*
416534 CCTCGATGCAT
1 CATCGATGCAT
416545 AAAATGCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (19 bp):
CATCGATGCATGGTATGTG
Found at i:417371 original size:15 final size:17
Alignment explanation
Indices: 417353--417390 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
417343 TTTATTTTAC
417353 TTATTTA-TTTT-CTTT
1 TTATTTAGTTTTACTTT
*
417368 TTATATAGTTTTACTTT
1 TTATTTAGTTTTACTTT
417385 TTATTT
1 TTATTT
417391 TCCTTATCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 6 0.32
16 4 0.21
17 9 0.47
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (17 bp):
TTATTTAGTTTTACTTT
Found at i:423204 original size:29 final size:28
Alignment explanation
Indices: 423149--423202 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
423139 AAATACCCCT
423149 ACTTTTTTACTTTGTTCTTATCTTCTTC
1 ACTTTTTTACTTTGTTCTTATCTTCTTC
423177 ACTTTTTTACTTTGTT-TTATC-TCTTC
1 ACTTTTTTACTTTGTTCTTATCTTCTTC
423203 TTGTTCTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 5 0.19
27 5 0.19
28 16 0.62
ACGTcount: A:0.11, C:0.20, G:0.04, T:0.65
Consensus pattern (28 bp):
ACTTTTTTACTTTGTTCTTATCTTCTTC
Found at i:424407 original size:24 final size:24
Alignment explanation
Indices: 424354--424407 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
424344 TCAAAGCATC
* *
424354 TGAAGATGCTCACCAGCCCGCCAA
1 TGAAGAGGCTCACCAGCCAGCCAA
* * *
424378 TAAAGAGGTTCACCAGCCAGCCGA
1 TGAAGAGGCTCACCAGCCAGCCAA
424402 TGAAGA
1 TGAAGA
424408 AGAACCAACC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.30, G:0.24, T:0.13
Consensus pattern (24 bp):
TGAAGAGGCTCACCAGCCAGCCAA
Found at i:429004 original size:9 final size:9
Alignment explanation
Indices: 428981--429034 Score: 63
Period size: 9 Copynumber: 5.9 Consensus size: 9
428971 TATTTATTAA
428981 TATATATAAT
1 TATA-ATAAT
* *
428991 AATAATTAT
1 TATAATAAT
*
429000 TATAAGAAT
1 TATAATAAT
*
429009 TATAAGAAT
1 TATAATAAT
429018 TATAATAAT
1 TATAATAAT
429027 TATAATAA
1 TATAATAA
429035 AAATAAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
9 35 0.92
10 3 0.08
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (9 bp):
TATAATAAT
Found at i:429655 original size:114 final size:112
Alignment explanation
Indices: 429487--429835 Score: 497
Period size: 113 Copynumber: 3.1 Consensus size: 112
429477 ATCTCCTTCT
*
429487 GTGATAGAA-TCAAAC-AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCA
1 GTGAT-GAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * *
429549 GATAAGTTCTTCTTATTATGAACTTTTCTATGGAAAAGTTGATCCATCGA
65 GATGAGTTCTTCTCATTATGAACTCTTC--TGGAAATGTTGATCCATCGA
*
429599 GTGATGAATTCAAACAAAAGGTTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCA
1 GTGATGAATTCAAACAAAAGG-TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * *
429664 GATGAGTTCTTCTCATTATGAACCCTACCTGGCAATGTTGATCCATCAA
65 GATGAGTTCTTCTCATTATGAACTCT-TCTGGAAATGTTGATCCATCGA
* * *
429713 GTGATGAATTCGAGCAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
1 GTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
*
429778 ATGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGATCCATTGA
66 ATGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGATCCATCGA
*
429825 GTGATGGATTC
1 GTGATGAATTC
429836 GAATTTTTGC
Statistics
Matches: 212, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
111 3 0.01
112 39 0.18
113 71 0.33
114 70 0.33
115 28 0.13
116 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (112 bp):
GTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
ATGAGTTCTTCTCATTATGAACTCTTCTGGAAATGTTGATCCATCGA
Found at i:431012 original size:21 final size:21
Alignment explanation
Indices: 430983--431023 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
430973 GTATGTGAAA
*
430983 AAAATAAATTGAATTTCAAAG
1 AAAAGAAATTGAATTTCAAAG
431004 AAAAGAAATTGAATTTCAAA
1 AAAAGAAATTGAATTTCAAA
431024 AAGATAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.10, T:0.27
Consensus pattern (21 bp):
AAAAGAAATTGAATTTCAAAG
Found at i:431396 original size:21 final size:21
Alignment explanation
Indices: 431371--431427 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 21
431361 TTGACCCTCC
*
431371 TTTTTTTATATATTTTTCATCA
1 TTTTTTT-CATATTTTTCATCA
431393 TTTTTTTCAT-TTTTT--TCA
1 TTTTTTTCATATTTTTCATCA
*
431411 TTTTTTTCATTTTTTTC
1 TTTTTTTCATATTTTTC
431428 TTCAAGCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 13 0.41
19 5 0.16
20 5 0.16
21 2 0.06
22 7 0.22
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTTTCATATTTTTCATCA
Found at i:431398 original size:12 final size:11
Alignment explanation
Indices: 431371--431426 Score: 52
Period size: 9 Copynumber: 5.5 Consensus size: 11
431361 TTGACCCTCC
431371 TTTTTTT-ATA
1 TTTTTTTCATA
*
431381 TATTTTTCATCA
1 TTTTTTTCAT-A
431393 TTTTTTTC--A
1 TTTTTTTCATA
431402 TTTTTTTC--A
1 TTTTTTTCATA
431411 TTTTTTTCAT-
1 TTTTTTTCATA
431421 TTTTTT
1 TTTTTT
431427 CTTCAAGCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 18 0.45
10 12 0.30
11 2 0.05
12 8 0.20
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTTTCATA
Found at i:431407 original size:8 final size:9
Alignment explanation
Indices: 431390--431427 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
431380 ATATTTTTCA
431390 TCATTTTTT
1 TCATTTTTT
431399 TCATTTTTT
1 TCATTTTTT
431408 TCATTTTTT
1 TCATTTTTT
431417 TCATTTTTT
1 TCATTTTTT
431426 TC
1 TC
431428 TTCAAGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (9 bp):
TCATTTTTT
Found at i:438454 original size:14 final size:15
Alignment explanation
Indices: 438437--438467 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
438427 ATTATTTTTT
438437 TGAATTTTAT-TTAA
1 TGAATTTTATCTTAA
438451 TGAATTTTATCTTAA
1 TGAATTTTATCTTAA
438466 TG
1 TG
438468 TAAAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (15 bp):
TGAATTTTATCTTAA
Found at i:441874 original size:28 final size:28
Alignment explanation
Indices: 441843--441915 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 28
441833 GAAACTAAAG
441843 TAAAGATATTAATAAAAAATAA-TATATA
1 TAAA-ATATTAATAAAAAATAAGTATATA
441871 T-AAATATT-ATGAAAATAATAAGTATATA
1 TAAAATATTAAT-AAAA-AATAAGTATATA
441899 TAAAA-ATTTAA-AAAAAA
1 TAAAATA-TTAATAAAAAA
441916 GGATTATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
25 2 0.05
26 9 0.23
27 9 0.23
28 13 0.33
29 5 0.13
30 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (28 bp):
TAAAATATTAATAAAAAATAAGTATATA
Done.