Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002756.1 Hibiscus syriacus cultivar Beakdansim tig00005682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44323

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1612--1641
15
2.0
15
93
0
51
63
0
20
16
1.31
8729--8765
17
2.3
17
86
9
51
8
16
2
72
1.19
10318--10360
15
2.8
16
80
16
54
55
4
6
32
1.47
13231--13269
21
1.9
21
94
5
71
30
12
30
25
1.93
14869--14941
34
2.1
34
80
14
80
68
1
4
26
1.15
14959--15009
23
2.2
24
89
3
77
47
5
3
43
1.46
14983--15189
38
5.7
37
70
15
121
43
8
4
42
1.55
15007--15145
70
2.0
72
84
5
185
46
7
3
42
1.48
15142--15219
31
2.4
32
85
6
95
34
10
5
50
1.59
15190--15357
72
2.3
73
80
8
175
41
10
2
45
1.52
30924--30951
12
2.3
12
100
0
56
21
0
17
60
1.36
30935--30984
21
2.4
21
86
0
64
6
4
16
74
1.17
30954--31000
14
3.5
13
80
8
58
2
2
10
85
0.78
30947--30992
21
2.2
21
96
0
83
0
4
15
80
0.86
34140--34179
6
6.7
6
94
0
71
50
0
2
47
1.14
35623--35667
21
2.1
21
87
0
63
17
26
17
37
1.93
35672--35989
20
15.9
20
93
1
476
34
20
23
21
1.96
35961--36001
20
2.0
20
85
0
55
34
19
21
24
1.97
36847--36900
24
2.2
24
90
0
81
22
18
18
40
1.91
39308--39396
20
4.4
20
81
2
108
37
23
20
19
1.94
39401--39446
19
2.4
19
92
0
74
50
17
15
17
1.79
39391--39490
53
1.9
53
91
2
166
47
18
20
15
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39497--39589
33
2.8
34
85
6
127
15
22
19
43
1.88
39566--39616
20
2.5
20
90
0
84
19
23
21
35
1.96
41549--41590
20
2.1
20
100
0
84
40
23
19
16
1.91
41546--41676
67
1.9
68
86
7
187
44
20
18
16
1.87
41713--41791
20
4.0
20
89
0
113
25
16
17
40
1.90
41709--41792
40
2.1
40
90
0
132
23
17
17
40
1.91
41801--41852
20
2.6
20
90
0
86
17
17
25
40
1.90
42234--42262
6
4.8
6
100
0
58
17
0
65
17
1.27
43720--43787
20
3.4
20
85
0
82
42
25
17
14
1.87
43833--43879
20
2.3
20
88
0
67
21
19
23
36
1.95

Tables:   1

The End!