Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002757.1 Hibiscus syriacus cultivar Beakdansim tig00005685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67747

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18246--18345
36
2.8
36
90
0
155
28
14
16
42
1.86
22910--22961
26
2.0
26
85
10
72
30
3
3
61
1.32
24322--24362
7
6.0
7
86
13
59
14
17
12
56
1.68
30937--31076
75
1.9
75
84
3
192
32
15
21
30
1.94
32360--32434
22
3.4
22
88
0
114
36
14
9
40
1.78
33160--33245
43
2.0
43
84
4
111
36
16
11
36
1.85
33203--33355
73
2.1
73
97
0
288
32
16
8
41
1.79
33515--33578
17
3.5
17
75
19
65
46
9
25
18
1.79
33483--33580
39
2.5
39
94
0
169
43
11
24
20
1.84
33490--33561
22
3.5
22
72
18
82
44
11
27
16
1.82
33572--33981
101
4.1
100
89
2
565
37
17
17
27
1.93
33572--33981
200
2.0
202
87
4
596
37
17
17
27
1.93
35133--35177
21
2.1
21
87
0
63
31
28
24
15
1.96
36835--36900
22
3.0
22
97
0
123
19
27
27
25
1.99
39853--39897
21
2.1
21
87
0
63
31
28
24
15
1.96
41565--41627
13
5.5
13
65
27
52
19
26
26
26
1.99
41553--41640
22
4.0
22
98
0
167
19
27
27
26
1.99
46876--46914
18
2.2
18
86
4
53
33
0
2
64
1.08
49917--49985
23
2.8
25
78
10
63
68
1
4
26
1.17
50587--50620
13
2.6
13
90
0
59
17
11
0
70
1.16
57420--57482
20
3.2
20
81
0
72
36
11
15
36
1.84
57777--57833
20
2.8
20
91
0
96
31
15
22
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57359--58055
347
2.0
348
86
2
972
39
14
15
30
1.87
59165--59209
13
3.4
13
80
17
56
44
6
0
48
1.29
59368--59411
2
22.0
2
100
0
88
50
0
0
50
1.00
59827--59851
2
12.5
2
100
0
50
48
0
0
52
1.00
59838--59904
27
2.5
27
80
9
91
38
5
11
43
1.66
59952--60001
2
25.5
2
88
11
77
46
2
0
52
1.12
60103--60206
29
3.6
27
74
19
86
46
7
1
44
1.43
62395--62491
45
2.2
45
92
0
167
50
1
5
43
1.31
62409--62478
16
4.6
16
68
18
51
51
0
1
47
1.09
64458--64521
30
2.1
31
85
2
85
65
9
6
18
1.42
64472--64527
30
1.9
30
85
3
78
64
10
7
17
1.47
64609--64647
18
2.2
18
86
9
53
76
2
5
15
1.06
66772--66864
41
2.2
43
84
5
120
20
18
7
53
1.68
66772--66861
42
2.1
42
83
4
110
21
16
6
55
1.64

Tables:   1

The End!