genome.fa.s2759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002759.1 Hibiscus syriacus cultivar Beakdansim tig00005687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72889

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2738--2805	35	1.9	35	85	11	95	38	8	11	41	1.73
2738--2805	17	3.9	17	84	7	84	38	8	11	41	1.73
4049--4098	22	2.3	22	100	0	100	34	26	0	40	1.56
4777--5802	246	4.3	246	80	9	1060	21	22	19	36	1.95
5166--5581	222	1.9	222	88	3	631	21	22	19	36	1.95
4920--5802	468	1.9	468	84	2	1193	22	22	18	36	1.95
16700--16755	2	28.0	2	100	0	112	50	0	0	50	1.00
25122--25169	23	2.1	23	84	0	60	37	43	14	4	1.65
31077--31138	2	31.5	2	96	3	117	51	0	0	48	1.00
31562--31630	23	3.0	23	73	0	75	21	21	24	31	1.98
35020--35071	19	2.8	18	80	8	68	28	19	30	21	1.97
36252--36285	2	17.0	2	93	0	59	52	0	0	47	1.00
36709--36776	23	3.0	23	80	0	82	19	25	25	30	1.98
40659--40778	30	4.1	30	89	2	181	25	26	15	33	1.95
40675--40790	60	1.9	59	83	3	142	27	25	14	31	1.95
47066--47105	21	1.9	21	85	10	55	62	0	17	20	1.33
47128--47168	22	1.9	21	90	5	64	26	0	36	36	1.57
55582--56115	264	2.0	264	94	0	942	28	25	8	37	1.85
57533--57573	22	1.9	21	90	5	64	34	36	2	26	1.70
57635--57668	18	1.9	17	88	5	50	26	17	0	55	1.42
62005--62045	22	1.9	21	90	5	64	34	36	2	26	1.70
66891--66940	18	2.8	17	84	6	64	8	14	6	72	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68732--68772	22	1.9	21	90	5	64	34	36	2	26	1.70

Tables:   1

The End!