genome.fa.s2760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002760.1 Hibiscus syriacus cultivar Beakdansim tig00005690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84990

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3306--3370	28	2.3	28	91	0	112	20	20	29	30	1.97
11724--11761	20	1.9	20	100	0	76	28	31	15	23	1.96
15723--15778	22	2.6	23	81	16	66	35	16	25	23	1.94
30003--30029	8	3.4	8	100	0	54	11	0	0	88	0.50
29994--30029	16	2.2	16	90	0	54	8	2	2	86	0.77
34187--34630	224	2.0	223	98	0	852	30	16	16	36	1.92
42482--42524	18	2.5	17	85	7	61	67	2	4	25	1.22
42885--43005	33	3.7	33	73	23	121	31	14	10	42	1.80
43467--44096	109	5.9	100	80	8	359	22	20	25	32	1.98
43534--44096	109	5.3	108	83	5	463	21	20	25	32	1.97
43626--44096	109	4.4	109	85	3	544	22	19	25	32	1.97
44677--44835	67	2.4	67	87	4	223	33	11	22	32	1.90
44710--45186	36	13.9	36	66	17	219	36	13	21	28	1.91
44878--45186	37	8.9	37	68	17	205	36	13	21	28	1.91
44710--45169	204	2.2	205	86	2	674	35	13	21	29	1.91
44777--45151	102	3.7	102	93	0	635	37	13	20	28	1.91
46047--46095	22	2.2	22	92	0	80	28	14	24	32	1.94
46059--46102	22	2.0	22	86	0	61	31	13	22	31	1.93
46755--46823	8	8.8	8	75	9	70	0	13	5	81	0.87
46732--46829	24	4.0	24	77	15	92	1	13	7	78	1.00
46752--46829	32	2.4	31	80	16	88	0	14	6	79	0.92
46755--46823	15	4.4	15	76	20	70	0	13	5	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47936--47974	8	5.0	8	84	6	53	58	12	17	10	1.61
47936--47974	15	2.5	15	87	4	51	58	12	17	10	1.61
51013--51051	16	2.3	18	83	16	57	66	2	5	25	1.25
51463--51531	34	2.0	34	94	0	120	31	14	11	42	1.82
53913--53946	13	2.6	13	95	0	59	23	32	14	29	1.94
56588--56655	26	2.6	26	84	9	77	32	19	14	33	1.92
56835--56869	2	17.5	2	100	0	70	48	0	0	51	1.00
64096--64144	22	2.1	24	85	7	66	32	34	4	28	1.76
65029--65074	24	1.9	24	86	0	65	21	30	13	34	1.91
65815--65855	22	1.9	21	90	5	64	29	2	34	34	1.71
65824--65873	26	2.0	25	84	4	64	28	0	38	34	1.57
70632--70662	13	2.4	13	94	0	53	0	19	0	80	0.71
70618--70691	34	2.3	32	84	13	98	5	16	4	74	1.16
70948--70989	21	2.0	21	86	9	59	64	0	14	21	1.29
71010--71050	22	1.9	21	90	5	64	26	2	36	34	1.70
72577--72616	21	1.9	21	85	10	55	62	0	17	20	1.33
72640--72676	19	2.0	18	89	5	56	27	2	37	32	1.71
77141--77181	22	1.9	21	90	5	64	26	2	36	34	1.70

Tables:   1

The End!