genome.fa.s2762.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002762.1 Hibiscus syriacus cultivar Beakdansim tig00005693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53341

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13021--13091	37	1.9	37	91	5	117	43	19	11	25	1.84
14210--14305	47	2.0	47	94	4	167	42	9	1	46	1.43
14221--14296	22	3.3	22	76	16	82	43	9	0	47	1.35
14228--14305	25	3.2	25	72	20	85	43	10	0	46	1.37
14534--14572	15	2.5	17	84	16	57	76	0	10	12	1.01
15769--15821	19	2.8	19	97	0	97	50	5	0	43	1.25
16766--17210	81	5.4	81	83	6	545	25	17	18	38	1.93
16794--17210	170	2.5	161	87	6	559	25	17	18	38	1.92
17084--17398	136	2.3	137	85	1	418	27	18	21	32	1.97
18058--18339	90	3.1	90	78	7	297	43	18	17	21	1.88
18058--18364	45	6.8	45	77	5	248	43	17	17	21	1.88
20131--20183	1	53.0	1	80	0	61	0	9	0	90	0.45
20132--20185	6	9.2	6	88	10	76	0	11	0	88	0.50
20131--20183	17	3.2	16	91	5	79	0	9	0	90	0.45
20131--20236	24	4.0	24	75	21	81	4	16	0	79	0.90
21912--21989	23	3.4	23	92	0	138	25	20	28	25	1.99
27888--27921	3	11.0	3	93	6	59	64	0	2	32	1.08
28171--28285	27	4.3	27	71	15	78	38	0	0	60	1.03
28194--28285	13	7.1	13	74	18	68	39	0	0	60	0.97
28183--28291	4	26.8	4	73	12	53	36	0	0	62	1.02
30549--30694	65	2.3	64	87	3	204	28	21	19	30	1.97
37136--37291	29	5.4	29	86	3	172	41	22	4	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37294--37328	18	1.9	18	88	0	52	14	22	42	20	1.88
48113--48151	19	2.1	19	95	0	69	20	38	15	25	1.92
48050--48258	65	3.2	63	78	9	174	29	26	16	26	1.97
48099--48261	65	2.5	65	78	1	193	30	27	15	26	1.96
50346--50385	20	2.0	21	85	14	57	37	15	5	42	1.68

Tables:   1

The End!