genome.fa.s2763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002763.1 Hibiscus syriacus cultivar Beakdansim tig00005694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175760

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2023--2114	47	1.9	48	86	6	134	36	21	10	30	1.88
3849--3896	2	24.5	2	95	4	89	50	0	0	50	1.00
8179--8225	19	2.4	20	92	3	78	48	2	10	38	1.50
12337--12379	19	2.2	20	91	4	70	51	0	9	39	1.34
17611--17656	21	2.2	21	88	7	67	65	8	6	19	1.43
17755--18180	101	4.2	100	77	6	394	35	11	13	39	1.80
19910--20803	254	3.4	252	76	9	692	34	14	10	40	1.81
19817--20803	264	3.8	260	76	7	880	34	14	10	40	1.80
22240--22264	13	1.9	13	100	0	50	84	0	0	16	0.63
26660--26712	26	2.0	26	85	0	70	35	16	20	26	1.94
27678--27793	24	4.8	24	87	6	146	25	16	18	40	1.90
27730--27803	24	3.1	24	86	3	87	22	14	18	43	1.87
33775--33805	7	4.4	7	100	0	62	25	29	29	16	1.96
33802--33857	5	10.4	5	78	14	58	7	21	53	17	1.67
33795--33857	22	2.9	22	100	0	126	9	22	50	17	1.74
33861--33955	19	4.9	19	80	13	95	28	27	27	16	1.97
33862--33954	9	9.7	9	79	11	87	29	27	26	16	1.97
33863--33954	29	3.2	28	84	9	105	28	28	27	16	1.97
41112--41167	5	10.4	5	78	14	58	7	21	53	17	1.67
41105--41167	22	2.9	22	100	0	126	9	22	50	17	1.74
41171--41265	19	4.9	19	80	13	95	28	27	27	16	1.97
41172--41264	9	9.7	9	79	11	87	29	27	26	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41173--41264	29	3.2	28	84	9	105	28	28	27	16	1.97
43334--43386	23	2.3	23	80	6	63	7	22	16	52	1.69
43757--43811	20	2.8	20	85	0	74	38	21	16	23	1.93
45925--45964	20	2.0	20	90	0	62	22	20	30	27	1.98
50061--50125	33	2.0	33	93	0	112	24	27	12	35	1.91
57415--57440	5	5.2	5	100	0	52	0	19	57	23	1.40
58572--58617	21	2.2	21	96	0	83	19	0	52	28	1.47
68070--68165	21	4.4	21	79	7	120	37	1	40	20	1.60
68091--68176	45	1.9	45	95	4	156	37	2	41	18	1.63
68264--68297	14	2.4	14	86	13	52	38	23	23	14	1.92
74923--74967	22	2.1	22	88	12	67	44	2	0	53	1.13
74934--75035	42	2.5	41	84	10	129	50	1	0	47	1.12
74930--75051	42	2.9	42	81	15	128	51	1	0	46	1.10
77638--77724	20	4.2	20	71	17	63	33	1	4	60	1.24
78184--78286	26	4.0	26	96	0	188	16	14	26	42	1.86
79521--79546	12	2.2	12	100	0	52	34	15	7	42	1.75
81291--82035	81	9.2	81	90	1	1147	30	22	11	35	1.90
82399--82453	22	2.6	21	80	8	67	27	27	14	30	1.95
84588--84624	18	2.1	18	94	0	65	29	5	18	45	1.72
84977--85024	14	3.2	14	77	13	51	20	6	0	72	1.05
89802--89841	21	1.9	21	84	0	53	25	20	12	42	1.86
89670--89989	66	4.8	66	88	1	444	29	18	11	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89992--90621	134	4.7	133	81	2	640	29	29	14	26	1.95
106684--106721	2	20.0	2	89	10	62	50	0	0	50	1.00
110119--110247	39	3.3	39	85	0	168	20	29	20	29	1.98
122786--122877	43	2.2	41	79	12	100	28	22	7	41	1.81
126036--126116	9	8.3	10	77	11	55	39	0	0	60	0.97
126048--126116	3	23.0	3	77	11	70	42	0	0	57	0.98
127141--127172	2	16.0	2	100	0	64	50	0	0	50	1.00
130105--130151	22	2.2	20	85	7	58	29	19	6	44	1.75
139827--139921	50	1.9	49	86	2	136	27	17	16	37	1.92
139948--140246	148	2.0	149	99	0	591	30	19	16	32	1.94
144550--144601	24	2.2	23	87	12	79	17	19	11	51	1.75
156856--156892	15	2.5	15	90	0	56	13	21	27	37	1.91
164132--164158	14	1.9	14	100	0	54	37	0	40	22	1.54
167874--167913	15	2.6	15	88	4	53	67	0	17	15	1.23
168536--168582	13	3.5	13	82	5	58	27	4	40	27	1.75
168547--168586	14	2.9	14	88	3	55	32	2	40	25	1.69
172942--173003	26	2.4	26	83	2	72	24	16	17	41	1.89

Tables:   1

The End!