genome.fa.s2764.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002764.1 Hibiscus syriacus cultivar Beakdansim tig00005701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80270

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1389--1458	21	3.2	23	86	10	101	32	5	22	38	1.78
1865--1934	20	3.3	22	80	13	92	34	5	21	38	1.77
2331--2403	23	3.2	23	90	0	110	35	5	20	38	1.76
2809--2881	23	3.2	23	90	0	110	34	5	20	39	1.76
1177--3281	474	4.4	478	94	2	3643	42	7	10	39	1.68
8930--9046	11	10.1	11	70	21	71	77	2	17	2	0.99
8932--9048	23	4.8	22	71	21	74	78	2	16	2	0.97
8943--9047	34	2.8	35	76	16	97	78	2	16	2	1.00
9009--9049	15	2.8	15	79	17	50	78	4	17	0	0.93
8963--9036	33	2.3	32	81	11	80	75	4	16	4	1.10
10072--10142	32	2.2	32	82	0	79	33	14	25	26	1.94
10084--10159	32	2.4	32	88	4	109	34	14	22	28	1.93
10550--10678	43	3.0	43	81	10	149	31	29	19	20	1.97
10852--10961	43	2.6	43	88	0	157	30	32	16	20	1.95
10529--11148	302	2.1	302	91	0	1019	32	25	18	23	1.97
11184--11343	42	3.8	42	93	0	266	26	23	19	31	1.98
11581--12171	111	5.3	109	84	5	737	30	24	17	27	1.97
11581--12151	220	2.6	218	87	4	815	30	24	16	28	1.97
16837--16861	13	1.9	13	100	0	50	0	24	20	56	1.43
17347--17411	3	21.7	3	96	0	121	64	0	1	33	1.03
17547--18186	114	5.6	113	87	7	809	29	20	13	37	1.91
17547--18181	340	1.9	341	88	4	958	29	20	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18846--18870	13	1.9	13	100	0	50	0	24	20	56	1.43
19354--19438	3	28.7	3	96	2	145	63	0	2	34	1.07
21254--21402	59	2.5	59	79	12	137	32	22	6	38	1.78
21528--21689	60	2.8	57	83	5	175	39	6	20	33	1.79
21714--21766	2	26.5	2	100	0	106	50	0	0	49	1.00
22890--22915	2	13.0	2	100	0	52	50	0	0	50	1.00
30995--31074	2	40.0	2	100	0	160	50	0	0	50	1.00
33227--33261	18	1.9	18	88	0	52	17	0	8	74	1.06
39687--39761	7	10.3	7	72	13	53	22	24	18	34	1.96
39704--39760	30	1.9	29	89	3	87	21	22	19	36	1.95
40957--41007	21	2.4	21	96	0	93	29	7	3	58	1.44
46130--46162	17	2.0	17	88	5	50	33	6	6	54	1.50
46163--46215	8	6.8	8	79	10	56	41	22	20	15	1.89
47126--47184	8	7.8	8	75	9	61	13	22	23	40	1.89
47126--47180	15	3.6	16	85	7	69	12	20	23	43	1.86
48796--48843	22	2.2	22	81	7	53	22	2	4	70	1.15
50664--50728	15	4.3	15	73	7	60	18	21	21	38	1.93
57122--57193	8	9.2	8	75	6	67	44	22	19	13	1.86
57114--57198	15	5.5	15	76	2	62	42	22	20	15	1.89
57114--57181	16	4.4	15	80	7	64	44	22	17	16	1.87
57122--57181	24	2.6	23	91	2	93	46	21	16	15	1.83
58195--58234	15	2.6	15	88	4	62	17	22	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59327--59386	8	7.8	8	79	5	70	15	21	21	41	1.89
59330--59382	24	2.3	23	90	3	79	15	20	20	43	1.88
60516--60717	8	25.2	8	99	0	395	38	24	11	25	1.90
61588--61647	30	2.0	30	90	6	95	26	16	6	50	1.70
64673--64729	21	2.7	21	91	0	96	35	12	21	31	1.90
73165--73206	21	2.0	22	85	4	59	38	2	11	47	1.53

Tables:   1

The End!