genome.fa.s2765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002765.1 Hibiscus syriacus cultivar Beakdansim tig00005702_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164046

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10923--10981	27	2.2	27	81	6	66	25	11	16	45	1.82
17296--17344	24	2.0	24	100	0	98	28	14	28	28	1.95
24943--24991	20	2.5	20	75	0	53	22	20	26	30	1.98
27532--27582	13	3.6	14	82	17	61	70	0	19	9	1.14
29511--29544	17	2.0	17	94	0	59	20	0	0	79	0.73
32694--32782	29	3.1	29	76	9	101	19	39	26	14	1.90
32797--32822	10	2.6	10	100	0	52	19	50	19	11	1.77
32811--32876	33	2.0	33	93	0	114	27	37	19	15	1.92
33067--33102	11	3.2	11	84	7	54	22	22	19	36	1.95
33393--33445	28	1.9	27	88	3	79	32	1	16	49	1.57
33392--33456	27	2.3	29	82	10	82	36	1	15	46	1.55
33481--33550	37	2.0	36	86	13	101	40	0	10	50	1.36
33570--33624	18	3.4	18	65	31	52	38	0	9	52	1.33
33652--33691	21	1.9	21	100	0	80	27	0	15	57	1.38
33871--33943	30	2.4	30	78	17	80	39	1	9	49	1.44
36250--36297	14	3.6	14	81	16	66	47	16	0	35	1.47
36269--36500	60	4.3	49	76	19	187	46	12	0	40	1.42
36367--36633	21	13.3	21	62	21	63	44	14	0	40	1.48
36318--36744	60	7.2	60	91	5	699	44	14	0	40	1.47
36318--36744	120	3.6	119	96	2	770	44	14	0	40	1.47
39796--39849	28	1.9	28	96	0	99	57	12	0	29	1.36
39792--39856	28	2.3	28	84	10	96	55	10	0	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39826--39874	21	2.3	21	85	3	71	53	16	0	30	1.43
40516--40838	30	11.1	30	78	13	320	11	18	46	23	1.81
40515--40809	60	5.1	60	79	12	355	10	18	46	23	1.80
40596--40642	10	4.7	10	75	19	53	8	17	51	23	1.72
40575--40777	109	1.9	108	89	3	318	11	18	46	24	1.81
40494--40844	169	2.1	169	98	0	684	11	19	45	23	1.82
40765--40811	10	4.7	10	75	19	53	8	17	51	23	1.72
40819--40905	29	3.0	28	80	6	102	16	28	39	16	1.89
40788--40905	58	2.0	60	88	3	177	13	25	41	19	1.88
47975--48089	57	2.0	57	96	0	212	20	18	29	31	1.96
56991--57037	22	2.1	22	84	7	60	38	2	19	40	1.63
61119--61152	16	2.1	16	89	10	52	32	5	23	38	1.79
61274--61307	15	2.3	15	100	0	68	20	38	5	35	1.77
63328--63377	24	2.1	24	96	0	91	30	14	12	44	1.81
64066--64128	29	2.2	29	100	0	126	41	6	14	38	1.71
64068--64116	15	3.3	15	72	16	57	42	4	12	40	1.61
70063--70103	18	2.3	18	86	0	55	34	0	2	63	1.08
71639--71682	21	2.0	23	86	8	65	22	18	13	45	1.84
76450--76491	22	1.9	22	95	0	75	26	23	21	28	1.99
83142--83167	2	13.0	2	100	0	52	50	0	0	50	1.00
102977--103062	29	2.9	29	84	6	93	24	41	17	16	1.89
103002--103090	29	3.1	29	85	0	115	23	40	21	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103126--103190	32	2.0	32	100	0	130	12	30	29	27	1.93
103176--103219	23	1.9	23	100	0	88	22	22	27	27	1.99
103643--103698	27	2.2	25	93	6	94	30	0	14	55	1.40
103991--104033	21	2.1	20	87	12	61	30	2	11	55	1.48
107171--107204	10	3.4	10	83	0	50	32	2	8	55	1.45
107210--107859	60	12.0	49	82	15	600	41	0	12	46	1.42
107206--107346	21	7.0	21	63	19	68	40	0	14	45	1.45
107340--107704	49	8.2	41	74	18	133	41	0	12	46	1.41
107270--107859	109	5.4	109	76	13	633	41	0	11	46	1.42
107526--107614	21	4.4	20	66	17	58	40	0	14	44	1.45
107586--107721	10	13.7	10	67	15	50	41	0	11	46	1.40
107209--107830	267	2.2	275	90	6	983	41	0	12	46	1.43
107646--107830	59	3.1	59	89	1	298	42	0	11	45	1.44
107803--107884	14	5.6	14	71	21	53	39	0	13	47	1.43
107756--107879	49	2.6	48	81	13	132	40	0	11	47	1.45
110431--110471	22	1.9	21	85	5	55	53	19	0	26	1.45
110617--110674	26	2.3	26	90	3	91	6	36	8	48	1.61
110725--110770	23	2.0	23	95	0	83	17	36	13	32	1.88
110930--111011	29	2.8	29	88	0	119	14	21	40	23	1.90
114573--114617	2	22.5	2	100	0	90	48	0	0	51	1.00
114674--114712	19	2.1	19	100	0	78	25	15	5	53	1.62
117824--117875	20	2.6	20	78	0	59	50	0	3	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117982--118079	29	3.4	28	67	22	67	46	6	6	40	1.53
117958--118105	58	2.6	57	80	12	185	46	6	6	41	1.53
119028--119077	20	2.7	18	77	19	57	58	6	2	34	1.34
121437--121575	55	2.5	55	80	0	152	43	8	28	19	1.80
121754--121987	99	2.3	99	84	7	285	29	3	30	35	1.75
127415--127861	2	225.5	2	70	17	267	45	4	4	46	1.41
127963--128011	16	3.1	15	82	11	55	30	4	0	65	1.11
137558--137656	31	3.2	31	98	0	189	21	26	15	37	1.92
140116--140158	21	2.0	21	81	0	50	30	30	25	13	1.94
145024--145066	21	2.0	21	82	8	52	32	27	23	16	1.96
145093--145130	20	1.9	20	94	0	67	23	36	31	7	1.84
145608--145911	149	2.0	149	97	0	572	27	16	20	36	1.93
145890--145934	23	2.0	23	86	0	63	20	24	28	26	1.99
148392--148510	64	1.9	62	84	3	157	36	20	16	26	1.93
149194--149256	23	2.8	21	79	13	72	22	23	23	30	1.99
153160--153193	16	2.1	16	88	0	50	64	2	20	11	1.39
156164--156222	23	2.6	22	89	7	91	18	25	28	27	1.98
157380--157424	16	2.8	15	78	15	54	2	44	0	53	1.13
157380--157417	8	4.8	8	84	9	51	2	42	0	55	1.14
160445--160565	59	2.1	58	84	1	152	28	16	24	30	1.97
160631--160672	20	2.1	20	90	0	66	16	9	26	47	1.77
160673--160906	42	5.4	44	90	7	363	38	6	22	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160673--160912	85	2.8	86	88	8	371	38	6	22	32	1.79
162706--162754	22	2.2	22	88	0	71	30	22	28	18	1.97
163617--163701	32	2.7	32	89	3	120	45	3	7	43	1.48
163693--163875	25	7.6	25	78	15	197	48	4	7	39	1.50
163691--163875	49	3.8	50	74	17	192	48	4	7	40	1.50
163825--163875	27	1.9	27	92	4	86	49	3	5	41	1.45

Tables:   1

The End!