Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002766.1 Hibiscus syriacus cultivar Beakdansim tig00005703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84766

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
624--659
2
18.0
2
100
0
72
50
0
0
50
1.00
3734--3894
60
2.7
60
79
4
155
43
6
19
29
1.77
5611--5652
20
2.1
20
91
8
68
33
9
26
30
1.88
9255--9317
30
2.1
30
87
0
90
26
30
28
14
1.95
9990--10027
20
1.9
20
88
0
58
39
15
21
23
1.92
12247--12291
24
1.9
23
90
4
72
48
0
0
51
1.00
12272--12304
14
2.3
15
89
5
50
57
3
3
36
1.29
19645--19701
4
13.2
4
75
14
51
70
5
3
21
1.22
19633--19684
27
1.9
27
92
0
86
67
7
5
19
1.36
19581--19686
31
3.3
31
71
17
90
67
5
4
21
1.30
21300--21349
3
17.0
3
76
19
52
68
0
0
32
0.90
23107--23180
30
2.5
29
86
6
96
20
20
21
37
1.94
23504--23596
26
3.7
25
76
11
91
45
1
17
36
1.56
26356--26397
2
21.0
2
100
0
84
50
0
0
50
1.00
33568--33625
30
1.9
30
85
0
80
24
29
25
20
1.99
38311--38351
21
2.0
21
90
0
64
21
17
31
29
1.96
38312--38358
21
2.2
21
84
0
58
25
17
25
31
1.97
42135--42160
2
13.0
2
100
0
52
50
0
0
50
1.00
42169--42202
3
11.3
3
100
0
68
67
0
0
32
0.91
42210--42294
32
2.7
31
76
8
82
62
2
7
28
1.34
43527--43592
3
22.0
3
100
0
132
66
0
0
33
0.92
43732--44560
116
7.1
116
90
1
1291
27
20
21
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44055--44117
21
2.9
23
68
15
62
17
23
23
34
1.96
43737--44560
234
3.5
233
92
0
1328
28
20
21
30
1.98
43732--44561
350
2.4
349
91
1
1333
27
20
21
30
1.98
45655--45758
54
1.9
54
84
0
136
28
23
14
33
1.94
48775--48918
72
2.0
72
86
0
198
38
16
18
26
1.92
55532--55578
3
16.0
3
95
4
87
65
0
0
34
0.93
56781--56841
32
1.9
32
96
0
113
59
8
26
6
1.51
57619--57643
12
2.1
12
100
0
50
8
48
16
28
1.74
64779--64817
20
2.0
20
84
0
51
23
5
23
48
1.70
64997--65056
21
2.7
22
79
5
68
20
23
36
20
1.95
72943--73010
7
9.1
7
73
17
57
77
1
16
4
0.99
73067--73198
69
1.9
69
93
0
228
38
22
11
27
1.88
74139--74247
32
3.4
32
82
6
105
30
12
18
38
1.88
74829--75150
106
3.0
105
85
2
387
35
22
18
22
1.96
75515--75703
37
5.4
37
69
16
141
28
19
12
40
1.88
75404--75582
87
2.1
87
95
0
322
32
18
12
35
1.89
75491--75730
102
2.4
102
92
0
399
31
19
12
37
1.88
75812--75928
36
3.2
36
85
9
166
25
20
14
39
1.91
75914--76004
38
2.4
38
89
5
132
39
23
8
28
1.84

Tables:   1

The End!