Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002768.1 Hibiscus syriacus cultivar Beakdansim tig00005706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65622

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12851--13007
65
2.4
65
78
8
176
24
17
24
33
1.96
16714--16755
20
2.1
20
100
0
84
45
14
21
19
1.85
18187--18334
76
2.0
75
89
4
226
28
2
10
58
1.44
18214--18361
75
2.0
76
89
4
228
27
2
10
60
1.41
18214--18363
76
2.0
76
89
5
232
27
2
10
60
1.41
19078--19121
18
2.6
18
89
7
65
34
4
0
61
1.16
24569--24599
10
3.0
10
95
4
53
12
0
0
87
0.55
24685--24789
54
2.0
52
83
7
131
48
14
19
18
1.81
26443--26608
75
2.2
75
84
4
217
31
1
10
56
1.44
26471--26621
75
2.0
78
87
6
220
29
1
9
58
1.41
27252--27300
19
2.6
18
81
9
62
18
4
2
75
1.06
31505--31554
13
3.8
13
81
0
55
32
10
20
38
1.85
35569--35741
89
2.0
88
88
3
258
60
10
2
26
1.41
45089--45113
12
2.1
12
100
0
50
68
0
0
32
0.90
47707--47762
4
14.0
4
78
14
62
75
0
0
25
0.81
47709--47751
22
2.0
22
90
0
68
74
0
0
25
0.82
47705--47761
26
2.1
27
84
9
73
75
0
0
24
0.80
50426--50462
19
1.9
19
88
0
56
21
24
10
43
1.84
50757--50810
18
2.9
18
81
5
72
74
3
3
18
1.12
50756--50810
6
9.0
6
76
4
56
74
3
3
18
1.11
50757--50814
19
3.1
19
80
11
75
72
3
5
18
1.18
54749--54796
21
2.3
21
88
0
69
18
29
16
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57747--57791
20
2.2
20
85
11
65
11
11
33
44
1.75
58048--58158
20
5.5
20
85
2
150
40
16
19
23
1.91
58048--58158
40
2.7
41
91
1
170
40
16
19
23
1.91
58145--58232
20
4.4
20
81
5
97
34
21
15
28
1.94
58048--58174
40
3.2
38
83
9
146
39
18
18
23
1.92
61465--61560
33
2.8
33
88
3
129
43
20
21
13
1.86
61597--61650
14
3.5
14
73
22
54
11
24
20
44
1.83
61575--61670
33
2.9
34
90
3
149
12
23
20
42
1.86
63774--63902
20
6.4
20
87
0
150
39
20
18
20
1.93
63967--64033
20
3.3
20
95
0
116
17
17
22
41
1.90
64007--64100
33
2.8
34
80
3
109
15
18
20
45
1.85

Tables:   1

The End!