genome.fa.s2769.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002769.1 Hibiscus syriacus cultivar Beakdansim tig00005708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132193

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--778	102	7.7	104	86	8	1055	33	25	18	22	1.96
1--778	201	3.9	204	85	9	1009	33	25	18	22	1.96
5--778	299	2.6	301	86	8	1069	33	25	18	22	1.96
1511--1612	35	2.8	36	80	7	118	38	14	14	32	1.87
2162--2254	12	7.8	12	67	23	63	29	3	1	66	1.14
2152--2250	24	4.3	24	72	24	88	29	4	1	65	1.17
2211--2256	23	2.0	24	87	12	69	30	0	2	67	1.03
2275--2314	12	3.6	11	87	9	55	25	5	5	65	1.34
2301--2357	7	8.4	7	84	9	66	40	0	0	59	0.97
2304--2357	13	4.1	13	88	7	65	40	0	0	59	0.98
2301--2357	20	3.0	20	87	5	73	40	0	0	59	0.97
2306--2357	2	27.5	2	81	11	65	42	0	0	57	0.98
2549--2595	2	24.0	2	95	4	87	51	0	0	48	1.00
2821--2859	21	1.9	21	89	5	62	33	2	0	64	1.08
2829--2941	23	5.1	21	69	17	61	19	5	3	71	1.20
6087--7010	165	5.6	165	84	5	1090	29	24	20	25	1.99
7616--7862	37	6.9	36	76	14	135	47	4	6	42	1.47
7572--7761	36	5.1	36	74	13	129	45	2	8	43	1.48
7772--7863	35	2.7	34	86	5	125	50	7	4	38	1.51
9034--9059	2	13.0	2	100	0	52	50	0	0	50	1.00
9103--9137	17	2.1	17	88	0	52	22	5	2	68	1.24
23102--23141	2	20.5	2	94	5	73	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23104--23187	8	9.9	8	74	12	51	53	1	1	44	1.16
24150--24201	10	5.3	10	88	4	70	30	0	0	69	0.89
24147--24205	3	20.3	3	80	16	63	30	0	0	69	0.89
24147--24205	16	3.8	16	86	4	77	30	0	0	69	0.89
24149--24200	13	3.8	13	78	14	59	30	0	0	69	0.89
27769--27840	27	2.7	27	95	2	128	36	11	23	29	1.89
34773--34893	42	2.9	42	83	1	154	26	23	21	28	1.99
34693--35355	260	2.6	259	91	0	1060	33	16	16	33	1.92
35434--35537	3	34.3	3	92	1	172	30	0	0	68	0.96
37289--37340	20	2.6	20	93	0	86	50	19	19	11	1.77
37331--37434	40	2.5	40	93	3	172	37	25	20	16	1.93
37331--37434	20	5.1	20	85	11	140	37	25	20	16	1.93
37549--37581	6	5.5	6	100	0	66	33	51	15	0	1.43
38330--38368	6	6.5	6	100	0	78	0	15	51	33	1.44
38479--38588	20	5.4	20	76	10	107	16	21	24	37	1.93
38479--38592	40	2.8	40	91	2	183	15	21	23	38	1.92
38579--38652	20	3.7	20	94	0	121	12	20	17	50	1.78
38479--38689	40	5.2	41	77	14	163	15	20	21	43	1.88
44020--44053	4	8.5	4	93	0	50	44	26	5	23	1.76
48614--48684	30	2.3	30	82	2	88	26	19	19	33	1.96
49174--49211	20	1.9	20	100	0	76	23	15	26	34	1.95
57887--57977	39	2.2	40	92	5	148	37	38	10	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57997--58081	36	2.4	36	95	0	161	35	32	16	15	1.90
57923--58442	256	2.0	254	85	8	698	36	27	12	23	1.90
58179--58255	37	2.1	38	92	7	131	41	35	10	12	1.78
58179--58270	37	2.5	39	84	12	122	39	36	11	11	1.79
60144--60182	19	2.1	19	95	0	69	25	12	10	51	1.71
61464--61488	7	3.6	7	100	0	50	44	0	16	40	1.47
64402--64436	18	1.9	18	88	0	52	28	17	0	54	1.43
65591--65654	19	3.6	19	76	20	75	17	35	29	17	1.92
65597--65662	14	4.4	14	80	17	78	19	36	28	15	1.92
65591--65662	33	2.2	33	94	0	126	18	36	29	16	1.93
67069--67112	22	2.0	22	90	0	70	52	27	13	6	1.66
71593--71637	20	2.5	17	78	21	56	26	13	4	55	1.57
74476--74535	2	30.0	2	100	0	120	50	0	0	50	1.00
75196--75236	14	2.9	14	81	0	55	7	4	19	68	1.32
76036--76061	2	13.0	2	100	0	52	50	0	0	50	1.00
76568--76646	34	2.3	35	95	4	142	7	41	7	43	1.61
80783--80823	3	13.7	3	85	10	57	29	0	2	68	1.03
80820--80857	6	6.8	6	85	14	55	28	0	0	71	0.87
81059--81115	27	2.1	27	90	0	87	19	47	17	15	1.83
94491--94743	3	81.3	3	64	18	58	31	5	3	58	1.40
94492--94553	22	2.6	25	80	17	78	29	4	0	66	1.12
94502--94550	18	2.6	19	81	12	66	28	4	0	67	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94702--94741	20	2.0	20	90	0	62	27	2	5	65	1.27
95529--95817	148	2.0	148	93	1	499	48	10	5	35	1.61
95975--96071	35	2.7	36	80	1	115	30	2	24	42	1.66
96298--96866	284	2.0	284	99	0	1129	30	21	21	26	1.98
98132--98184	26	2.1	25	89	3	79	30	5	3	60	1.37
98294--98341	19	2.5	19	80	9	53	39	6	2	52	1.39
101693--101743	23	2.3	23	82	3	59	23	17	23	35	1.95
102674--102717	22	2.0	22	82	8	54	38	0	2	59	1.10
103058--103093	17	2.1	16	90	10	54	66	0	2	30	1.06
105089--105138	24	2.1	24	100	0	100	24	14	18	44	1.86
105905--105960	20	2.7	20	83	5	58	14	8	10	66	1.45
115410--115456	20	2.3	20	100	0	94	40	0	21	38	1.53
126952--127084	35	4.0	34	78	8	139	45	8	8	38	1.64
127009--127064	17	3.2	18	71	16	55	48	8	3	39	1.52

Tables:   1

The End!