genome.fa.s277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000277.1 Hibiscus syriacus cultivar Beakdansim tig00000513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63348

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3424--3562	45	3.0	45	87	6	206	35	23	5	35	1.77
3680--3841	40	4.1	40	90	0	261	33	27	16	23	1.95
4118--4189	24	3.0	24	93	0	126	43	13	11	31	1.80
4724--4795	30	2.4	30	80	2	81	34	22	8	34	1.84
10239--10277	19	1.9	20	85	15	53	69	5	5	20	1.28
13503--13564	22	2.7	22	80	9	72	79	0	4	16	0.90
13495--13562	15	4.5	14	74	20	50	77	0	4	17	0.92
13529--13604	5	15.4	5	81	13	68	72	6	2	18	1.18
13769--13795	2	13.5	2	100	0	54	51	0	0	48	1.00
13832--13871	9	4.6	8	87	12	53	80	0	5	15	0.88
13810--13871	17	3.6	18	77	12	58	75	1	8	14	1.10
13808--13867	22	2.6	22	76	7	57	76	1	8	13	1.08
13983--14007	13	1.9	13	100	0	50	56	0	4	40	1.18
15020--15090	2	37.5	2	86	10	105	50	1	0	47	1.09
15015--15104	10	10.0	8	85	11	56	48	1	2	47	1.21
17090--17159	36	2.0	35	83	8	88	74	1	10	14	1.14
17135--17206	14	4.8	16	70	16	55	73	5	2	18	1.15
17352--17390	2	19.5	2	100	0	78	51	0	0	48	1.00
17403--17460	22	2.7	21	73	19	57	74	1	10	13	1.15
18617--18667	2	26.5	2	88	7	79	50	1	0	47	1.12
18614--18673	18	3.6	16	89	8	68	51	1	0	46	1.10
25649--25713	33	2.0	33	93	0	112	43	16	18	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26716--26800	20	4.2	20	82	8	91	29	22	14	34	1.93
26748--26799	21	2.5	20	81	6	59	30	21	11	36	1.89
26945--27004	20	3.1	19	79	9	59	28	21	11	38	1.89
26977--27043	20	3.3	20	81	4	73	28	19	13	38	1.89
26859--27043	40	4.6	39	73	12	135	29	21	11	37	1.88
27979--28030	24	2.2	25	82	10	72	30	23	15	30	1.95
27985--28037	24	2.2	24	89	0	79	26	18	15	39	1.90
28955--29006	24	2.2	24	85	0	68	23	17	19	40	1.91
27613--29539	968	2.0	967	97	0	3604	36	16	18	28	1.93
30328--30360	16	2.1	16	94	0	57	39	9	24	27	1.85
31652--31686	16	2.2	16	89	0	52	68	14	0	17	1.21
33092--33224	21	6.3	21	79	3	133	25	15	38	21	1.92
33358--33403	4	11.5	4	80	0	56	67	4	2	26	1.21
33525--33687	63	2.6	63	76	11	181	38	33	8	19	1.82
33635--33687	21	2.5	22	79	14	67	39	30	9	20	1.84
33802--33912	42	2.6	42	88	0	150	20	15	40	23	1.90
35442--35469	14	2.0	14	100	0	56	42	21	14	21	1.88
35405--35487	34	2.4	34	82	9	105	46	21	14	16	1.83
35869--35915	22	2.1	22	92	0	76	21	19	40	19	1.92
36080--36125	20	2.3	20	92	0	74	19	15	21	43	1.87
36080--36186	40	2.7	38	73	12	90	23	13	26	37	1.91
36091--36186	20	4.8	20	80	5	88	21	13	28	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36601--36659	26	2.3	26	82	5	66	50	5	1	42	1.34
36733--36804	22	3.2	22	75	13	67	52	0	0	47	1.00
37208--37306	34	3.0	33	94	4	173	52	10	9	28	1.65
37582--37639	10	5.6	10	73	15	55	22	46	20	10	1.81
37861--37944	29	2.9	29	83	0	96	13	29	39	17	1.88
39161--39220	24	2.5	24	97	0	111	5	16	25	53	1.63
43204--43268	3	22.0	3	72	9	53	35	0	1	63	1.04
43225--43266	12	3.6	12	87	6	59	40	0	0	59	0.97
44860--44901	20	2.2	19	86	4	57	33	0	2	64	1.07
52718--52936	114	1.9	114	93	0	375	32	16	21	29	1.95
54043--54217	75	2.3	75	85	3	219	30	14	22	32	1.94
55555--55609	22	2.5	22	87	0	83	34	14	14	36	1.87
56025--57503	112	12.9	112	83	7	1607	38	15	18	27	1.91
56733--56796	20	3.2	20	61	12	51	46	9	18	25	1.79
56158--57576	235	6.1	235	93	3	2184	39	15	18	27	1.90
56968--57030	20	3.2	20	61	17	51	44	9	20	25	1.82
56158--57576	468	3.0	469	91	3	2198	39	15	18	27	1.90
57305--57503	110	1.8	109	89	5	312	38	14	19	27	1.91
57858--57921	3	21.3	3	73	9	51	35	0	1	62	1.05
57877--57927	26	2.0	26	84	7	68	43	0	0	56	0.99
57864--57921	14	4.3	14	72	12	50	37	0	1	60	1.07
59501--59542	20	2.2	19	86	4	57	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59589--59628	21	1.9	21	89	0	62	50	2	2	45	1.28
61016--61086	13	5.4	14	73	21	55	77	4	2	15	1.04
61007--61083	28	2.8	29	86	7	99	76	3	2	16	1.05
61022--61088	12	5.2	12	75	16	55	76	4	2	16	1.08
61029--61097	15	5.1	13	77	16	61	75	4	4	15	1.12
62371--62423	22	2.4	22	77	0	61	11	30	37	20	1.88

Tables:   1

The End!