Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002770.1 Hibiscus syriacus cultivar Beakdansim tig00005709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72722

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18889--18959
19
3.6
18
73
9
52
61
0
4
33
1.15
26722--26776
17
3.2
17
80
12
51
41
1
7
49
1.41
29074--29119
6
7.7
6
92
0
74
30
15
2
52
1.55
31232--31553
85
3.8
85
88
2
441
32
17
21
28
1.95
32876--32907
2
16.0
2
100
0
64
50
0
0
50
1.00
36048--36082
18
2.0
17
88
5
52
45
0
8
45
1.34
37707--37798
44
2.1
44
97
0
175
23
15
21
39
1.92
37713--37782
22
3.2
22
63
15
54
24
17
18
40
1.91
38278--38331
27
2.0
27
96
0
99
31
12
18
37
1.89
41935--41976
22
1.9
22
85
0
57
54
16
0
28
1.42
44796--44840
13
3.5
13
84
6
65
17
51
15
15
1.77
44863--44929
19
3.5
19
71
18
57
52
1
0
46
1.09
47258--47295
17
2.2
18
86
13
53
65
7
5
21
1.38
49631--49660
11
2.7
11
100
0
60
36
0
26
36
1.57
55833--55961
36
3.5
35
70
13
107
30
17
12
40
1.86
55796--55965
74
2.3
74
87
3
236
31
18
11
38
1.87
55869--56172
38
8.1
38
66
14
141
32
16
10
40
1.82
55978--56375
76
5.3
73
79
8
376
31
17
10
39
1.84
55982--56375
152
2.6
149
81
7
460
31
17
10
39
1.85
59780--59848
14
4.8
14
75
18
61
57
4
17
20
1.56
59779--59820
15
2.9
15
82
10
52
59
2
19
19
1.49
59796--59875
28
2.8
29
83
9
85
57
5
15
22
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63285--63342
28
2.1
27
93
3
98
32
29
18
18
1.96
63319--63359
21
2.0
21
90
0
64
31
24
17
26
1.97
63322--63507
90
2.0
90
82
10
218
26
20
20
32
1.97
63445--63514
21
3.3
21
71
15
63
21
17
21
40
1.92
63459--63522
21
3.2
19
69
16
56
25
18
21
34
1.96
63616--63665
5
9.4
5
97
2
73
26
54
20
0
1.45
64167--64231
5
12.0
5
98
1
85
0
18
55
26
1.43
64309--64380
21
3.4
21
74
14
85
38
22
18
20
1.93
64306--64399
42
2.2
42
98
0
179
37
24
17
21
1.94
64330--64405
21
3.6
21
74
13
75
35
26
18
19
1.95
64358--64543
90
2.0
92
85
8
256
30
20
22
27
1.98
64503--64549
21
2.2
21
92
0
76
21
23
23
31
1.98
68833--68906
2
39.0
2
85
10
102
45
0
1
52
1.09
69193--69222
13
2.3
13
100
0
60
13
0
0
86
0.57

Tables:   1

The End!