Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002771.1 Hibiscus syriacus cultivar Beakdansim tig00005711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40486
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:516 original size:21 final size:21
Alignment explanation
Indices: 469--533 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
459 AAAGAAATCA
* *
469 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
491 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
511 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
532 AG
1 AG
534 GCATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:2416 original size:18 final size:19
Alignment explanation
Indices: 2383--2426 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
2373 GTAGGGTTAA
2383 TTTGTATAAGATTTATAAT
1 TTTGTATAAGATTTATAAT
* *
2402 TTTGTATACGA-TTATATT
1 TTTGTATAAGATTTATAAT
2420 TTTGTAT
1 TTTGTAT
2427 GTGAATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (19 bp):
TTTGTATAAGATTTATAAT
Found at i:2958 original size:183 final size:188
Alignment explanation
Indices: 2539--3458 Score: 1320
Period size: 183 Copynumber: 4.9 Consensus size: 188
2529 CAATATGGCC
2539 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTC-ATCCCCAAAA-CATCGAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCA-ATAT-AAAAAGTGTCGAT--CCAAAATCATCG-A
*
2602 AACCAAAAGTATAA--TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
61 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTAT--
*
2665 GAGAATATGTCT-AATAATGTGTCGA-ACTAATATAGTTTGTGTCGATTTTTTTTCCAGAATGAA
123 --G-ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGA-TTTATTTCCAGAATGAA
2728 TGGAA
184 TGGAA
*
2733 AACAGGGTG--CCCAT-AATTGTCGAT-CATATATAAAAAGTGTCGATCCAAAATCATCGAACCC
1 AACAGGGTGCACCCATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCAAAATCATCGAACCC
2794 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTT-T-ATATGT
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTATGATATGT
2857 CTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATTTATTTCCAGAATGAATGG-A
130 CTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATTTATTTCCAGAATGAATGGAA
2915 AACAGGGTGCACCCATAAAGTGTCGATCC-ATAT-AAAAGTGTCGATCCAAAATCATCGAACCCA
1 AACAGGGTGCACCCATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCAAAATCATCGAACCCA
2978 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTT-T-ATATGTC
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTATGATATGTC
3041 TAAATAATGTGTCG--ACT-ATATAGTTTGTGTCGATATTTATTTCCAGAATGAATGGAA
131 TAAATAATGTGTCGACACTAATATAGTTTGTGTCG--ATTTATTTCCAGAATGAATGGAA
3098 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCA-ATATAAAAAGTGTCGAT-CCAAAATCATCGAACC
3163 CAAAAGTATAATGTAATATGTAA-TTTTC-ATCTAACCGGTACAATTATACCGGTTTTATGTGAG
64 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTA--T--G
*
3226 ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTCCAGAATGAATGGA
124 ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGAT-TTATTTCCAGAATGAATGGA
3291 A
188 A
*
3292 AACAGGGTGCACCCATAAAGAGTCGATCCATATATAAAAAGTGTCGATCC-AAATCATCGAA-CC
1 AACAGGGTGCACCCATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCAAAATCATCGAACCC
*
3355 AAAAGTATAATGTAATAT-TAA-TTTTCAATCTAACC-GTACATTTATACCGGTTTATGAGAGAA
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTAT----G-A
*
3417 TATGTCT-AATAATGTGTCGACACTAATAGAGTTTGTGTCGAT
125 TATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGAT
3459 ACTAATTTAA
Statistics
Matches: 686, Mismatches: 8, Indels: 69
0.90 0.01 0.09
Matches are distributed among these distances:
180 15 0.02
181 3 0.00
182 39 0.06
183 169 0.25
184 29 0.04
185 37 0.05
186 21 0.03
187 40 0.06
188 21 0.03
189 60 0.09
190 80 0.12
191 37 0.05
192 37 0.05
193 4 0.01
194 79 0.12
195 15 0.02
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (188 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCAAAATCATCGAACCCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTATGATATGTC
TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATTTATTTCCAGAATGAATGGAA
Found at i:4925 original size:3 final size:3
Alignment explanation
Indices: 4905--4985 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
4895 TGAAGCTGAC
* * * * * ** *
4905 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
4953 GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
4986 CCAAACAAGT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:4944 original size:36 final size:36
Alignment explanation
Indices: 4893--4969 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
4883 CGGTCGCAGA
*
4893 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
4929 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
4965 GATGA
1 GATGA
4970 TGATGAAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:4985 original size:12 final size:12
Alignment explanation
Indices: 4893--4981 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
4883 CGGTCGCAGA
*
4893 GATGAAGCTGAC
1 GATGAAGATGAC
4905 GATGAAGATGAC
1 GATGAAGATGAC
*
4917 GATGATGATGAC
1 GATGAAGATGAC
* *
4929 GATGAAGCTGGC
1 GATGAAGATGAC
*
4941 GATGAAGATGAT
1 GATGAAGATGAC
* * *
4953 GACGATGATGAT
1 GATGAAGATGAC
* *
4965 GATGATGATGAA
1 GATGAAGATGAC
4977 GATGA
1 GATGA
4982 TGATCCAAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:6739 original size:182 final size:182
Alignment explanation
Indices: 6431--6953 Score: 915
Period size: 182 Copynumber: 2.9 Consensus size: 182
6421 CTTTCAACAT
** * * *
6431 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
6496 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
6561 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCA-A
6614 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCG-GAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
6678 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
* *
6743 AATGTGTCGATACGATTTAAAAAAGTATCGACATTTACACATCGGAACCCAG
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAA
* *
6795 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
* *
6860 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCC-GATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
6924 AATGTGTCGATACCATTTAAAAAAGTGTCG
131 AATGTGTCGATACGATTTAAAAAAGTGTCG
6954 GTAATTTTAA
Statistics
Matches: 326, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
181 96 0.29
182 176 0.54
183 54 0.17
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (182 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAA
Found at i:9436 original size:25 final size:25
Alignment explanation
Indices: 9402--9466 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
9392 TTATCATTAA
9402 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
9427 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
9452 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
9467 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:9839 original size:23 final size:23
Alignment explanation
Indices: 9808--9870 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
9798 ATAGGTAAAC
*
9808 ATATGATGTAATAGGTAACCCTT
1 ATATAATGTAATAGGTAACCCTT
* **
9831 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAACCCTT
9854 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
9871 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAACCCTT
Found at i:9878 original size:23 final size:23
Alignment explanation
Indices: 9808--9880 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
9798 ATAGGTAAAC
* * **
9808 ATATGATGTAATAGGTAACCCTT
1 ATATAATGTAATAGGTATCGGTT
*
9831 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
9854 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
9877 ATAT
1 ATAT
9881 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:10717 original size:22 final size:23
Alignment explanation
Indices: 10682--10724 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
10672 TATTGTACTT
**
10682 TATAATATTTCCGGT-TAAATAA
1 TATAATATAACCGGTCTAAATAA
10704 TATAATATAACCGGTCTAAAT
1 TATAATATAACCGGTCTAAAT
10725 TTTAACCGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (23 bp):
TATAATATAACCGGTCTAAATAA
Found at i:11753 original size:21 final size:20
Alignment explanation
Indices: 11705--11760 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
11695 CGATTCTTGA
11705 AAATCGCAATGCGATATTAC
1 AAATCGCAATGCGATATTAC
* * *
11725 AAATTCGCATTGCGATTTTCC
1 AAA-TCGCAATGCGATATTAC
*
11746 AGAATCGCAACGCGA
1 A-AATCGCAATGCGA
11761 ATATGAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.10
21 24 0.83
22 2 0.07
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (20 bp):
AAATCGCAATGCGATATTAC
Found at i:11809 original size:20 final size:20
Alignment explanation
Indices: 11786--11940 Score: 231
Period size: 20 Copynumber: 7.7 Consensus size: 20
11776 CGCGAACACA
11786 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
11806 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACGCGTATCCG
*
11826 TAAATCGTAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
11846 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACGCGTATCCG
*
11866 TATATCGCAACGCGTATCCG
1 TAAATCGCAACGCGTATCCG
* *
11886 TAAATCGCAACGAC-AATACG
1 TAAATCGCAACG-CGTATCCG
11906 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACGCGTATCCG
11927 TAAATCGCAACGCG
1 TAAATCGCAACGCG
11941 ATTTTTAAAG
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
20 103 0.86
21 17 0.14
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (20 bp):
TAAATCGCAACGCGTATCCG
Found at i:11811 original size:40 final size:39
Alignment explanation
Indices: 11748--11941 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 39
11738 GATTTTCCAG
* ** * * *
11748 AATCGCAACGCGAATATGAAAATCACAACGCGAACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAAC-CGTA
* *
11788 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCGTA
* * *
11828 AATCGTAACGCGTATCCGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACCGTA
* *
11868 TATCGCAACGCGTATCCGTAAATCGCAACGAC-AATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACG-CGAA-CCGT-A
11909 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGA
11942 TTTTTAAAGC
Statistics
Matches: 132, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 97 0.73
41 34 0.26
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.19
Consensus pattern (39 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACCGTA
Found at i:11831 original size:60 final size:60
Alignment explanation
Indices: 11748--11940 Score: 237
Period size: 60 Copynumber: 3.2 Consensus size: 60
11738 GATTTTCCAG
* ** * * *
11748 AATCGCAACGCGAATATGAAAATCACAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACGTAAATCGCAACGCGTATCCGTA
* * * *
11808 AATCGCAACGTGTATCCGTAAATCGTAACGCGTATC-CGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCG-AACACGTAAATCGCAACGCGTATCCGTA
* *
11868 TATCGCAACGCGTATCCGTAAATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACG-CGAACACGT-AAATCGCAACGCGTATCCGTA
11929 AATCGCAACGCG
1 AATCGCAACGCG
11941 ATTTTTAAAG
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
59 1 0.01
60 77 0.69
61 34 0.30
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACGTAAATCGCAACGCGTATCCGTA
Found at i:12608 original size:33 final size:34
Alignment explanation
Indices: 12557--12734 Score: 143
Period size: 34 Copynumber: 5.1 Consensus size: 34
12547 CGGAAATTAC
* * *
12557 AATCGCAACGA-GAGAATCGCAATACGAAATGAA
1 AATCGCAACAATGAAAATCGCAATGCGAAATGAA
*
12590 AATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACAATGAAAATCGCAATGC-GAAATGAA
* * *
12624 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-C
1 AATCGCAA--C--AATGAAAATCGCAATGCGA-AAT-GAA
*
12663 AAT-GCGGA-AATGAAAATCGCAATGCGAAATGAA
1 AATCGC-AACAATGAAAATCGCAATGCGAAATGAA
* *
12696 AATCGCAACGA-GAGAATCGCAATGCGGAAATGAA
1 AATCGCAACAATGAAAATCGCAATGC-GAAATGAA
12730 AATCG
1 AATCG
12735 TAATGCGAAA
Statistics
Matches: 117, Mismatches: 14, Indels: 27
0.74 0.09 0.17
Matches are distributed among these distances:
32 2 0.02
33 40 0.34
34 48 0.41
36 1 0.01
38 4 0.03
39 21 0.18
40 1 0.01
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.13
Consensus pattern (34 bp):
AATCGCAACAATGAAAATCGCAATGCGAAATGAA
Found at i:12622 original size:20 final size:19
Alignment explanation
Indices: 12571--12755 Score: 193
Period size: 19 Copynumber: 10.4 Consensus size: 19
12561 GCAACGAGAG
*
12571 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
*
12590 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
12604 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
12624 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
12643 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
12657 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
12677 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
12696 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
12710 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
12730 AATCGTAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
12749 AATCGCA
1 AATCGCA
12756 TTACGATTCT
Statistics
Matches: 140, Mismatches: 8, Indels: 36
0.76 0.04 0.20
Matches are distributed among these distances:
14 32 0.23
15 2 0.01
16 3 0.02
17 7 0.05
19 55 0.39
20 41 0.29
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:12638 original size:53 final size:53
Alignment explanation
Indices: 12571--12755 Score: 318
Period size: 53 Copynumber: 3.5 Consensus size: 53
12561 GCAACGAGAG
* * *
12571 AATCGCAATACGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGCGGAAATGAA
12624 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
12677 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
*
12730 AATCGTAATGCGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCA
12756 TTACGATTCT
Statistics
Matches: 127, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 126 0.99
54 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
Found at i:12795 original size:20 final size:19
Alignment explanation
Indices: 12770--12868 Score: 127
Period size: 20 Copynumber: 5.4 Consensus size: 19
12760 GATTCTCTCG
12770 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
12790 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
12809 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
12823 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
12842 TTACGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
12862 TTGCGAT
1 TTGCGAT
12869 AGTCATTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
14 6 0.09
16 7 0.10
17 7 0.10
19 24 0.35
20 25 0.36
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:12795 original size:53 final size:52
Alignment explanation
Indices: 12738--12843 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 52
12728 AAAATCGTAA
12738 TGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATTTCCGCAT
1 TGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATTT-CGCAT
** ** ** *
12791 TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
1 TGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATTTCGCAT
12843 T
1 T
12844 ACGATTTTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 6 0.13
53 40 0.87
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.42
Consensus pattern (52 bp):
TGCGAAATGAAAATCGCATTACGATTCTCTCGTTGCGATTTTCATTTCGCAT
Found at i:12862 original size:53 final size:53
Alignment explanation
Indices: 12751--12868 Score: 202
Period size: 53 Copynumber: 2.2 Consensus size: 53
12741 GAAATGAAAA
* *
12751 TCGCATTACGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTACGATTTTCATT
12804 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTACGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTACGATTTTCATT
12856 TCCGCATTGCGAT
1 T-CGCATTGCGAT
12869 AGTCATTTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
52 18 0.29
53 44 0.71
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTACGATTTTCATT
Found at i:12994 original size:14 final size:14
Alignment explanation
Indices: 12975--13011 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
12965 CATCAATTAC
12975 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
12989 ACAAATCATCTTTT
1 ACAAATCAACTTTT
13003 ACAAATCAA
1 ACAAATCAA
13012 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:14920 original size:19 final size:19
Alignment explanation
Indices: 14878--15050 Score: 141
Period size: 19 Copynumber: 9.6 Consensus size: 19
14868 TAGTTTACTT
* *
14878 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
*
14898 TCGCAACGCGAAATGAGAA
1 TCGCAACGCGAAATGAAAA
* **
14917 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
* * **
14936 TCGTAATGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
14955 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
14974 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
14988 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
15007 TCGCAA--CG--A-GAGAA
1 TCGCAACGCGAAATGAAAA
15021 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
15040 TCGCAATGCGA
1 TCGCAACGCGA
15051 TTTTGGTTTC
Statistics
Matches: 124, Mismatches: 19, Indels: 21
0.76 0.12 0.13
Matches are distributed among these distances:
14 18 0.15
15 1 0.01
16 7 0.06
17 7 0.06
18 1 0.01
19 78 0.63
20 12 0.10
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.12
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:14991 original size:14 final size:14
Alignment explanation
Indices: 14972--15028 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
14962 GCGAAATGAA
*
14972 AATCGCAACGACAG
1 AATCGCAACGAAAG
14986 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
*
15003 AAAATCGCAACGAGAG
1 --AATCGCAACGAAAG
15019 AATCGCAACG
1 AATCGCAACG
15029 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 18 0.50
16 5 0.14
17 5 0.14
19 8 0.22
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:14999 original size:33 final size:33
Alignment explanation
Indices: 14953--15045 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
14943 GCGAAACCAA
14953 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
* *
14986 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGACAG
15019 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
15046 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGACAG
Found at i:15042 original size:52 final size:52
Alignment explanation
Indices: 14912--15050 Score: 147
Period size: 52 Copynumber: 2.7 Consensus size: 52
14902 AACGCGAAAT
* * * *
14912 GAGAATCGCAACGAGAAACCAAAATCGTAATGCGAAACCAAAATCGCAACGC
1 GAGAATCGCAACGCGAAACGAAAATCGCAATGCGAAACCAAAATCGCAACGA
* ** * **
14964 GA-AAT-GAAAATCGCAACGACAGAATCGCAATGCGAAATGAAAATCGCAACGA
1 GAGAATCGCAACGCGAAACGA-A-AATCGCAATGCGAAACCAAAATCGCAACGA
*
15016 GAGAATCGCAACGCGAAATGAAAATCGCAATGCGA
1 GAGAATCGCAACGCGAAACGAAAATCGCAATGCGA
15051 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
50 8 0.12
51 4 0.06
52 43 0.63
53 4 0.06
54 9 0.13
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.11
Consensus pattern (52 bp):
GAGAATCGCAACGCGAAACGAAAATCGCAATGCGAAACCAAAATCGCAACGA
Found at i:15062 original size:19 final size:19
Alignment explanation
Indices: 15046--15123 Score: 103
Period size: 19 Copynumber: 4.4 Consensus size: 19
15036 AAAATCGCAA
15046 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
15065 TGCGATTTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
15079 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
**
15098 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
15117 TGCGATT
1 TGCGATT
15124 CTCTCGTTGC
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
14 12 0.23
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 36 0.69
ACGTcount: A:0.08, C:0.17, G:0.28, T:0.47
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:15107 original size:14 final size:14
Alignment explanation
Indices: 15062--15088 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15052 TTTGGTTTCG
15062 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
15076 CGTTGCGATTTTG
1 CGTTGCGATTTTG
15089 GTTTCGCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:15131 original size:52 final size:53
Alignment explanation
Indices: 15046--15155 Score: 159
Period size: 52 Copynumber: 2.1 Consensus size: 53
15036 AAAATCGCAA
** * * *
15046 TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGTTGCGATTTT-GGTTTCGCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGCGT
*
15098 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGTGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGCGT
15151 TGCGA
1 TGCGA
15156 AAGTAAACTA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 38 0.75
53 13 0.25
ACGTcount: A:0.09, C:0.17, G:0.27, T:0.46
Consensus pattern (53 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTTCGCGT
Found at i:17074 original size:21 final size:21
Alignment explanation
Indices: 17018--17082 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
17008 TCTTTTGGTT
17018 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
***
17039 G-AATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
*
17059 GAAATAAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
17080 GAA
1 GAA
17083 TCGCAACGCG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 17 0.47
21 19 0.53
ACGTcount: A:0.49, C:0.15, G:0.25, T:0.11
Consensus pattern (21 bp):
GAAATGAAAATCGCAACGAGA
Found at i:17086 original size:14 final size:14
Alignment explanation
Indices: 17067--17123 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
17057 GAGAAATAAA
17067 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
17081 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
17100 AATCGCAACGAGAG
1 AATCGCAACGAGAG
17114 AATCGCAACG
1 AATCGCAACG
17124 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:17102 original size:33 final size:33
Alignment explanation
Indices: 17018--17133 Score: 142
Period size: 33 Copynumber: 3.3 Consensus size: 33
17008 TCTTTTGGTT
*
17018 GAAATGAAAATCGCAACGAGAGAATGACTGTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGAG-A--A---TCGCAAC--GC
*
17059 GAAATAAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
17092 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
17125 GAAATGAAA
1 GAAATGAAA
17134 TCTAAGTGAA
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
33 42 0.58
35 7 0.10
38 1 0.01
40 1 0.01
41 21 0.29
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:17538 original size:20 final size:20
Alignment explanation
Indices: 17513--17705 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
17503 CTTTAAAAAT
17513 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
17533 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
* *
17553 TGTCGTTACGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
* *
17574 CGCGTTGCGATATACGAATA
1 CGCGTTGCGATTTACGGATA
*
17594 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
17614 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
17634 CACATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
17654 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
17674 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
17694 CGCGTTGCGATT
1 CGCGTTGCGATT
17706 CTGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
20 129 0.88
21 17 0.12
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:18314 original size:11 final size:11
Alignment explanation
Indices: 18269--18327 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
18259 AAAGTTGACG
18269 TTTTTATTG-A
1 TTTTTATTGCA
*
18279 ATTTTATT-CA
1 TTTTTATTGCA
* * * *
18289 CTTTTAATCCT
1 TTTTTATTGCA
18300 TTTTTATTGCA
1 TTTTTATTGCA
*
18311 TTTTTATTGAA
1 TTTTTATTGCA
18322 TTTTTA
1 TTTTTA
18328 AAAAAGTAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
10 14 0.37
11 24 0.63
ACGTcount: A:0.22, C:0.08, G:0.05, T:0.64
Consensus pattern (11 bp):
TTTTTATTGCA
Found at i:18408 original size:20 final size:21
Alignment explanation
Indices: 18385--18423 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
18375 ATGAAAATAC
18385 AATAAAAATAATA-AAAAGTG
1 AATAAAAATAATACAAAAGTG
*
18405 AATAAAATTAATACAAAAG
1 AATAAAAATAATACAAAAG
18424 AATATAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (21 bp):
AATAAAAATAATACAAAAGTG
Found at i:19874 original size:111 final size:110
Alignment explanation
Indices: 19676--20047 Score: 593
Period size: 111 Copynumber: 3.3 Consensus size: 110
19666 AACTTTCAAA
* * *
19676 AAAGTATCGATCATTTTTATAAAAAGTATCTATACTTTCAACATATCAGGTCAATTTTACTGATT
1 AAAGTATCGATCATTTTTAT-AAAAGTATCGATACTTTCAACATATCAGGTAAATTTTAC-GTTT
* *
19741 TTGTCATAATGAAACTGATTTTGTCATATTTATACTTGTTATATTGT
64 TTGTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTGT
* *
19788 AAAGTATCTATCATTTTTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTATCGTTTT
1 AAAGTATCGATCATTTTTATAAAAGTATCGATACTTTCAACATATCAGGTAAATTTTA-CGTTTT
*
19853 TGTCATAATGAAACTGGTTTTGTCATATTTTTACCTGTTATATTGT
65 TGTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTGT
*
19899 AAAGTATCTATCATTTTTATAAAAGTATCGATACTTTCAACATATCAGGTAAATTTTACCGTTTT
1 AAAGTATCGATCATTTTTATAAAAGTATCGATACTTTCAACATATCAGGTAAATTTTA-CGTTTT
19964 TGTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTTGT
65 TGTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATA-TTGT
*
20011 AAAATATCGATACATTTTTAT-AAAGTATCGATACTTT
1 AAAGTATCGAT-CATTTTTATAAAAGTATCGATACTTT
20048 ATAGGCGCTA
Statistics
Matches: 244, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
111 186 0.76
112 49 0.20
113 9 0.04
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (110 bp):
AAAGTATCGATCATTTTTATAAAAGTATCGATACTTTCAACATATCAGGTAAATTTTACGTTTTT
GTCATAATGAAACTGGTTTTGTCATATTTTTACTTGTTATATTGT
Found at i:20517 original size:22 final size:21
Alignment explanation
Indices: 20473--20517 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
20463 ATTACATAAC
* *
20473 TTTTAAAAAAGTATCGATCCT
1 TTTTAAAAAAGTATAGATACT
*
20494 TTTTATAAAAAGTATATATACT
1 TTTTA-AAAAAGTATAGATACT
20516 TT
1 TT
20518 CAACATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (21 bp):
TTTTAAAAAAGTATAGATACT
Found at i:20572 original size:804 final size:803
Alignment explanation
Indices: 19351--20850 Score: 2621
Period size: 804 Copynumber: 1.9 Consensus size: 803
19341 CGTCCATATA
*
19351 TATTTCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAG
1 TATTTCACTGTGGAAAATATTAATTTAAGGTTATCGTTTGAGTGAGTTTTAAGATATTAATTTAG
* *
19416 TAATTATACGCGTCTAATGATTTATTTTTTATGTTACGGTATATATTATTATTAAATTAAAAATA
66 TAATTATACGCGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAATTAAAAACA
*
19481 ATAAACATAGATATTACATATTTATTATTATCTTTGGTTAAAATTGTTAAATTTAAATTCTAAAT
131 ATAAACATAGATATTACATATTTATTATTATCTTTGATTAAAATTGTTAAATTTAAATTCTAAAT
*
19546 AATATTTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAAT
196 AATATTTTTATAAAATATCAAAACAATCAAAGAATTTTTTGTGTAAATGAAATTATTAAATTAAT
*
19611 ATTGTAGGTAGAAAACATGAAACACTATTAAAAAATTTTGAAACATAAATTACATAACTTTCAAA
261 ATTGTAGGTAGAAAACAAGAAACACTATTAAAAAATTTTGAAACATAAATTACATAACTTTCAAA
* * * *
19676 AAAGTATCGATCATTTTTATAAAAAGTATCTATACTTTCAACATATCAGGTCAATTTTACTGATT
326 AAAGTATCGATCATTTTTATAAAAAGTATATATACTTTCAACATATCAGATAAATTTTACCGATT
* * *
19741 TTGTCATAATGAAACTGATTTTGTCATATTTATACTTGTTATATTGTAAAGTATCTATCATTTTT
391 TTGTCATAATGAAACTGATTTTGTCATATTTATACCTATTATATTGTAAAGTATATATCATTTTT
* *
19806 ATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTATCGTTTTTGTCATAATGAAACTGGT
456 ATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGAAACT-GT
*
19871 TTTGTCATATTTTTACC-TGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTATCGATACTT
520 TTTGTCATATTTTT-CCATGTTATATTGTAAAGTATCTATCATTTTTATAAAAGGATCGATACTT
* *
19935 TCAACATATCAGGTAAATTTTACCGTTTTTGTCATAATGAAACTGGTTTTGTCATATTTTTACTT
584 TCAACATATCAGGTAAATTTTACCGTTTTTGTCATAATGAAACTGATTTTGTCATATTTTTACCT
*
20000 GTTATATTTGTAAAATATCGATACATTTTTATAAAGT-ATCGATACTTTATAGGCGCTATTATTG
649 GTTATA-TTGTAAAATATCGAT-CATTTTTATAAAATGATCGATACTTTATAGGCGCTATTATTG
20064 CTTTTATTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCC
712 CTTTTATTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCC
20129 GGTAGGTAGTTTAATGTAATAGGTAGG
777 GGTAGGTAGTTTAATGTAATAGGTAGG
*
20156 TATTTCACTGT-GAAAATCATTAATTTAAGGTTATGGTTTGAGTGAGTTTTAAGATATTAATTTA
1 TATTTCACTGTGGAAAAT-ATTAATTTAAGGTTATCGTTTGAGTGAGTTTTAAGATATTAATTTA
20220 GTAATTATACGCGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAATTAAAAAC
65 GTAATTATACGCGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAATTAAAAAC
*
20285 AATAAACATAGATATTACATCTTTATTATTATCTTTGATTAAAATTGTTAAATTTAAATTCTAAA
130 AATAAACATAGATATTACATATTTATTATTATCTTTGATTAAAATTGTTAAATTTAAATTCTAAA
20350 TAATA-TTTTATAAAATATCAAAACAATCAAAGAATTTTTTGTGTAAATGAAATTATTAAATTAA
195 TAATATTTTTATAAAATATCAAAACAATCAAAGAATTTTTTGTGTAAATGAAATTATTAAATTAA
* * *
20414 TATTGTAGGTGGAAAACAAGAAGCACTATTAAAAAATTTTGAAACATAAATTACATAACTTTTAA
260 TATTGTAGGTAGAAAACAAGAAACACTATTAAAAAATTTTGAAACATAAATTACATAACTTTCAA
* *
20479 AAAAGTATCGATCCTTTTTATAAAAAGTATATATACTTTCAACATATTAGATAAATTTTACCGAT
325 AAAAGTATCGATCATTTTTATAAAAAGTATATATACTTTCAACATATCAGATAAATTTTACCGAT
* *
20544 TTTGTCATAATGAAACTGATTTTGTCATATTTTTACCTATTATATTGTAAAGTATATATCCTTTT
390 TTTGTCATAATGAAACTGATTTTGTCATATTTATACCTATTATATTGTAAAGTATATATCATTTT
20609 TATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGT
455 TATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGT
* * *
20674 TTTGTCATATTTTTCCATGTTATATTGTAAAGTATTTATCCTTTTTATAAAAGGATTGATACTTT
520 TTTGTCATATTTTTCCATGTTATATTGTAAAGTATCTATCATTTTTATAAAAGGATCGATACTTT
*
20739 CAACATATCTGGTAAATTTTACCGTTTTTGTCATAATGAAACTGATTTTGTCATATTTTTACCTG
585 CAACATATCAGGTAAATTTTACCGTTTTTGTCATAATGAAACTGATTTTGTCATATTTTTACCTG
* *
20804 TTATATTGTAAAGTATCTATCATTTTTATAAAATGATCGATACTTTA
650 TTATATTGTAAAATATCGATCATTTTTATAAAATGATCGATACTTTA
20851 AACATATCAG
Statistics
Matches: 658, Mismatches: 34, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
801 13 0.02
802 27 0.04
803 127 0.19
804 305 0.46
805 186 0.28
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.43
Consensus pattern (803 bp):
TATTTCACTGTGGAAAATATTAATTTAAGGTTATCGTTTGAGTGAGTTTTAAGATATTAATTTAG
TAATTATACGCGTCTAATGATTTATTTTTTATGTTACGATATATATTATTATTAAATTAAAAACA
ATAAACATAGATATTACATATTTATTATTATCTTTGATTAAAATTGTTAAATTTAAATTCTAAAT
AATATTTTTATAAAATATCAAAACAATCAAAGAATTTTTTGTGTAAATGAAATTATTAAATTAAT
ATTGTAGGTAGAAAACAAGAAACACTATTAAAAAATTTTGAAACATAAATTACATAACTTTCAAA
AAAGTATCGATCATTTTTATAAAAAGTATATATACTTTCAACATATCAGATAAATTTTACCGATT
TTGTCATAATGAAACTGATTTTGTCATATTTATACCTATTATATTGTAAAGTATATATCATTTTT
ATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTTTGTCATAATGAAACTGTT
TTGTCATATTTTTCCATGTTATATTGTAAAGTATCTATCATTTTTATAAAAGGATCGATACTTTC
AACATATCAGGTAAATTTTACCGTTTTTGTCATAATGAAACTGATTTTGTCATATTTTTACCTGT
TATATTGTAAAATATCGATCATTTTTATAAAATGATCGATACTTTATAGGCGCTATTATTGCTTT
TATTTTAAATTCCAAAAGTGTCGATACTTATTTAAATGGAATCGATACTTTCAACATATCCGGTA
GGTAGTTTAATGTAATAGGTAGG
Found at i:20847 original size:111 final size:111
Alignment explanation
Indices: 20480--20960 Score: 689
Period size: 111 Copynumber: 4.3 Consensus size: 111
20470 AACTTTTAAA
* * ** * * *
20480 AAAGTATCGATCCTTTTTATAAAAAGTATATATACTTTCAACATATTAGATAAATTTTACCGATT
1 AAAGTATCTATCCTTTTTAT-AAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGTTT
*
20545 TTGTCATAATGAAACTGATTTTGTCATATTTTTACCTATTATATTGT
65 TTGTCATAATGAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
* *
20592 AAAGTATATATCCTTTTTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGGTTT
1 AAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGTTTT
20657 TGTCATAATGAAACTG-TTTTGTCATATTTTT-CCATGTTATATTGT
66 TGTCATAATGAAACTGATTTTGTCATATTTTTACC-TGTTATATTGT
* * *
20702 AAAGTATTTATCCTTTTTATAAAAGGATTGATACTTTCAACATATCTGGTAAATTTTACCGTTTT
1 AAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGTTTT
20767 TGTCATAATGAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
66 TGTCATAATGAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
* * *
20813 AAAGTATCTATCATTTTTATAAAATGATCGATACTTTAAACATATCAGGTAAATTTTACCGTTTT
1 AAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGTTTT
* * * * *
20878 TATCATAATGAAACTGGTTTTATCATATTTTTACCTGTGACATTGT
66 TGTCATAATGAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
* * * *
20924 AAAATATCGATACATTTTTAT-AAAGTATCGATACTTT
1 AAAGTATCTAT-CCTTTTTATAAAAGGATCGATACTTT
20961 ATAGGCGCTA
Statistics
Matches: 337, Mismatches: 28, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
109 2 0.01
110 102 0.30
111 204 0.61
112 29 0.09
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (111 bp):
AAAGTATCTATCCTTTTTATAAAAGGATCGATACTTTCAACATATCAGGTAAATTTTACCGTTTT
TGTCATAATGAAACTGATTTTGTCATATTTTTACCTGTTATATTGT
Found at i:21604 original size:111 final size:111
Alignment explanation
Indices: 21398--21689 Score: 410
Period size: 111 Copynumber: 2.6 Consensus size: 111
21388 GTATTTATAC
* * * *
21398 TTTCAACATATCAATTAAATTTTACCGGTTTTGTCATAATGAAACTTGTTTTTTTCATATTTTTA
1 TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAA-TTGATTTTTTCATATTTTTA
* * *
21463 CCTATTATATTGTAAAATATCTATTATTTTTATAAAATG-ATTGATAA
65 CCTGTTATATAGTAAAATATCTATTATTTTTATAAAA-GAATCGATAA
* ** *
21510 TTTCAACATATTAGGTAAATTTTACTATTTTTGTCATAATGAAATTGATTTTATCATATTTTTAC
1 TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAATTGATTTTTTCATATTTTTAC
*
21575 CTGTTATATAGTAAAATATCTATCT-TTTTTATAAAAGAATCGATAC
66 CTGTTATATAGTAAAATATCTAT-TATTTTTATAAAAGAATCGATAA
*
21621 TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATAAAATT-ATTTTTTTCATATTTTTA
1 TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAATTGA-TTTTTTCATATTTTTA
21685 CCTGT
65 CCTGT
21690 AATTAACCTA
Statistics
Matches: 160, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
110 2 0.01
111 119 0.74
112 39 0.24
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (111 bp):
TTTCAACATATTAAGTAAATTTTACCGTTTTTGTCATAATGAAATTGATTTTTTCATATTTTTAC
CTGTTATATAGTAAAATATCTATTATTTTTATAAAAGAATCGATAA
Found at i:21730 original size:23 final size:23
Alignment explanation
Indices: 21699--21819 Score: 152
Period size: 23 Copynumber: 5.3 Consensus size: 23
21689 TAATTAACCT
* * *
21699 ATTACATAAGCGCTGCCTAATAC
1 ATTATATAAGCGCTACCTATTAC
*
21722 ATTATATAAGCGTTACCTATTAC
1 ATTATATAAGCGCTACCTATTAC
*
21745 ATTATATAAACGCTACCTATTAC
1 ATTATATAAGCGCTACCTATTAC
*
21768 ATTATATAAGCGTTACCTATTAC
1 ATTATATAAGCGCTACCTATTAC
* * * *
21791 TTTATATAAACGTTACATATTAC
1 ATTATATAAGCGCTACCTATTAC
21814 ATTATA
1 ATTATA
21820 CAAACGGTAC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 86 1.00
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.37
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTATTAC
Found at i:21786 original size:46 final size:46
Alignment explanation
Indices: 21699--21819 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
21689 TAATTAACCT
* * * *
21699 ATTACATAAGCGCTGCCTAATACATTATATAAGCGTTACCTATTAC
1 ATTATATAAACGCTACCTATTACATTATATAAGCGTTACCTATTAC
21745 ATTATATAAACGCTACCTATTACATTATATAAGCGTTACCTATTAC
1 ATTATATAAACGCTACCTATTACATTATATAAGCGTTACCTATTAC
* * *
21791 TTTATATAAACGTTACATATTACATTATA
1 ATTATATAAACGCTACCTATTACATTATA
21820 CAAACGGTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.37
Consensus pattern (46 bp):
ATTATATAAACGCTACCTATTACATTATATAAGCGTTACCTATTAC
Found at i:21805 original size:69 final size:69
Alignment explanation
Indices: 21699--21832 Score: 187
Period size: 69 Copynumber: 1.9 Consensus size: 69
21689 TAATTAACCT
* * * *
21699 ATTACATAAGCGCTGCCTAATACATTATATAAGCGTTACCTATTACATTATATAAACGCTACCTA
1 ATTACATAAGCGCTACCTAATACATTATATAAACGTTACATATTACATTATACAAACGCTACCTA
21764 TTAC
66 TTAC
* * * * *
21768 ATTATATAAGCGTTACCTATTACTTTATATAAACGTTACATATTACATTATACAAACGGTACCTA
1 ATTACATAAGCGCTACCTAATACATTATATAAACGTTACATATTACATTATACAAACGCTACCTA
21833 ATATGTTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.35
Consensus pattern (69 bp):
ATTACATAAGCGCTACCTAATACATTATATAAACGTTACATATTACATTATACAAACGCTACCTA
TTAC
Found at i:21824 original size:23 final size:23
Alignment explanation
Indices: 21714--21832 Score: 166
Period size: 23 Copynumber: 5.2 Consensus size: 23
21704 ATAAGCGCTG
* *
21714 CCTAATACATTATATAAGCGTTA
1 CCTATTACATTATATAAACGTTA
*
21737 CCTATTACATTATATAAACGCTA
1 CCTATTACATTATATAAACGTTA
*
21760 CCTATTACATTATATAAGCGTTA
1 CCTATTACATTATATAAACGTTA
*
21783 CCTATTACTTTATATAAACGTTA
1 CCTATTACATTATATAAACGTTA
* * *
21806 CATATTACATTATACAAACGGTA
1 CCTATTACATTATATAAACGTTA
21829 CCTA
1 CCTA
21833 ATATGTTATT
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 84 1.00
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (23 bp):
CCTATTACATTATATAAACGTTA
Found at i:28683 original size:20 final size:20
Alignment explanation
Indices: 28658--28712 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
28648 CTATTCCCTA
**
28658 GTAATCTTTTATTCCCACTT
1 GTAATCTTACATTCCCACTT
28678 GTAATCTTACATTCCCACTT
1 GTAATCTTACATTCCCACTT
*
28698 ATAATCTTACATTCC
1 GTAATCTTACATTCC
28713 GTGAACCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.04, T:0.44
Consensus pattern (20 bp):
GTAATCTTACATTCCCACTT
Found at i:30234 original size:3 final size:3
Alignment explanation
Indices: 30228--30273 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
30218 TATTTATTTA
* *
30228 ATT ATT AAT AAT ATT ATT AATT ATT -TT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
30273 A
1 A
30274 ACATATTTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:30251 original size:27 final size:27
Alignment explanation
Indices: 30221--30274 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
30211 TTTTTTTTAT
30221 TTATTTAATTATTAATAATATTATTAA
1 TTATTTAATTATTAATAATATTATTAA
* * *
30248 TTATTTTATTATTATTATTATTATTAA
1 TTATTTAATTATTAATAATATTATTAA
30275 CATATTTACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TTATTTAATTATTAATAATATTATTAA
Found at i:30282 original size:27 final size:26
Alignment explanation
Indices: 30222--30282 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
30212 TTTTTTTATT
*
30222 TATTTAATTATTAATAATATTATTAAT
1 TATTT-ATTATTAATAATATTATTAAA
* *
30249 TATTTTATTATTATTATTATTATTAACA
1 TA-TTTATTATTAATAATATTATTAA-A
30277 TATTTA
1 TATTTA
30283 CAATTACATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (26 bp):
TATTTATTATTAATAATATTATTAAA
Found at i:31910 original size:58 final size:55
Alignment explanation
Indices: 31848--31966 Score: 143
Period size: 58 Copynumber: 2.1 Consensus size: 55
31838 GTCCCTAAAG
* *
31848 TTTTTTTTAATTTT-GTCCCTAAAGTTTTTATTTTT-TATTTTAATCCCTTAAGTTTCTA
1 TTTTTTCT-ATTTTAGTCCCTAAAGTTTCTATTTTTCTATTTT--TCCCTT-A-TTTCTA
*
31906 TTTTTTCTATTTTAGTCCCTTAAGTTTCTATTTTTGCTATTTTTCCCTTATTTCTA
1 TTTTTTCTATTTTAGTCCCTAAAGTTTCTATTTTT-CTATTTTTCCCTTATTTCTA
31962 TTTTT
1 TTTTT
31967 ATGATTTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
56 11 0.20
57 6 0.11
58 32 0.58
60 6 0.11
ACGTcount: A:0.17, C:0.14, G:0.05, T:0.64
Consensus pattern (55 bp):
TTTTTTCTATTTTAGTCCCTAAAGTTTCTATTTTTCTATTTTTCCCTTATTTCTA
Found at i:31953 original size:28 final size:28
Alignment explanation
Indices: 31857--31975 Score: 129
Period size: 30 Copynumber: 4.2 Consensus size: 28
31847 GTTTTTTTTA
* * *
31857 ATTTTGTCCCTAAAGTTTTTATTTTT-T
1 ATTTTATCCCTTAAGTTTCTATTTTTCT
31884 ATTTTAATCCCTTAAGTTTCTATTTTTTCT
1 ATTTT-ATCCCTTAAGTTTCTA-TTTTTCT
31914 ATTTTAGTCCCTTAAGTTTCTATTTTTGCT
1 ATTTTA-TCCCTTAAGTTTCTATTTTT-CT
*
31944 ATTTT-TCCCTT-A-TTTCTATTTTTAT
1 ATTTTATCCCTTAAGTTTCTATTTTTCT
31969 GATTTTA
1 -ATTTTA
31976 AATGTCTATT
Statistics
Matches: 81, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
25 1 0.01
26 16 0.20
27 6 0.07
28 19 0.23
29 11 0.14
30 28 0.35
ACGTcount: A:0.18, C:0.14, G:0.06, T:0.61
Consensus pattern (28 bp):
ATTTTATCCCTTAAGTTTCTATTTTTCT
Found at i:32055 original size:29 final size:30
Alignment explanation
Indices: 31984--32055 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
31974 TAAATGTCTA
* *
31984 TTTAGTCCTTTAAATTTTTGTTTATGCTAT
1 TTTAGTCCATTAAATTTGTGTTTATGCTAT
* * **
32014 TTTAATCAATTAAATTTGTGTTT-TTTTAT
1 TTTAGTCCATTAAATTTGTGTTTATGCTAT
*
32043 TTTAGTCCCTTAA
1 TTTAGTCCATTAA
32056 GTTTCTTTGT
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.24, C:0.10, G:0.08, T:0.58
Consensus pattern (30 bp):
TTTAGTCCATTAAATTTGTGTTTATGCTAT
Found at i:32392 original size:31 final size:32
Alignment explanation
Indices: 32333--32392 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
32323 TTCACGTTTA
*
32333 TTTATTTTGATTATTTTTTAATTCTTTTCCCT
1 TTTATTTTGATTATTTTTTAATTATTTTCCCT
*
32365 TTTATTTTG-TT-TTTTTTATGTTATTTTC
1 TTTATTTTGATTATTTTTTA-ATTATTTTC
32393 TTTACAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 9 0.36
32 9 0.36
ACGTcount: A:0.13, C:0.08, G:0.05, T:0.73
Consensus pattern (32 bp):
TTTATTTTGATTATTTTTTAATTATTTTCCCT
Found at i:38220 original size:19 final size:19
Alignment explanation
Indices: 38196--38232 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
38186 AATTTTACAC
38196 TTAGGGAACCGATTCCCCA
1 TTAGGGAACCGATTCCCCA
*
38215 TTAGGGTACCGATTCCCC
1 TTAGGGAACCGATTCCCC
38233 CCACTCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (19 bp):
TTAGGGAACCGATTCCCCA
Done.