genome.fa.s2773.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002773.1 Hibiscus syriacus cultivar Beakdansim tig00005713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134996

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138--413	138	2.0	139	92	5	463	35	6	14	43	1.72
409--442	18	1.9	18	94	5	61	50	5	5	38	1.51
2825--2874	20	2.4	21	83	3	66	30	18	18	34	1.94
8628--8683	24	2.2	24	78	9	58	37	12	17	32	1.88
8728--8781	21	2.6	21	93	0	90	24	18	24	33	1.97
8896--9182	141	2.0	144	91	2	463	38	6	13	41	1.71
11922--11954	2	16.5	2	100	0	66	48	0	0	51	1.00
15779--15811	16	2.0	17	88	5	50	21	9	30	39	1.84
16309--16346	18	2.1	18	85	9	51	26	5	21	47	1.71
16996--17034	21	1.9	20	84	5	51	51	5	2	41	1.38
17466--17669	42	4.7	43	72	11	141	50	5	21	23	1.69
18047--18104	31	1.9	30	82	10	73	58	6	12	22	1.57
19290--19665	193	2.0	192	84	7	496	41	5	9	44	1.58
22158--22743	190	3.1	191	85	5	764	40	4	9	45	1.58
26037--26069	16	2.1	16	88	11	50	27	3	21	48	1.64
29406--29433	2	14.0	2	100	0	56	50	0	0	50	1.00
29508--29560	24	2.3	23	80	9	63	62	0	5	32	1.19
31007--31048	20	2.1	20	95	0	75	35	16	21	26	1.94
31312--31822	105	4.9	105	98	0	968	22	18	24	34	1.96
32044--32073	1	30.0	1	100	0	60	0	0	0	100	0.00
43490--43542	24	2.3	23	80	3	61	62	0	7	30	1.23
49930--49977	24	2.0	24	91	4	78	12	8	22	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49936--49991	24	2.3	24	84	3	67	14	8	17	58	1.61
52926--52986	28	2.1	28	90	3	95	44	8	14	32	1.75
53266--53317	22	2.4	22	75	12	54	36	17	3	42	1.67
57807--58256	230	2.0	227	94	1	792	45	8	7	39	1.61
58322--58366	19	2.3	19	88	3	72	53	11	17	17	1.72
58489--58535	20	2.4	19	82	10	67	53	10	17	19	1.72
58498--58540	20	2.3	19	88	11	63	51	11	16	20	1.75
60767--60830	21	3.1	21	77	8	60	39	15	29	15	1.89
60864--60929	33	2.0	33	90	0	105	28	0	48	22	1.51
62715--62763	19	2.6	19	90	6	73	30	4	10	55	1.52
62888--64163	393	3.2	394	98	1	2470	35	15	16	32	1.90
62888--64163	196	6.5	197	98	0	2470	35	15	16	32	1.90
65620--65681	18	3.4	18	79	0	79	37	9	35	17	1.83
65620--65705	6	14.3	6	77	0	64	37	8	34	19	1.82
65635--65709	3	25.0	3	73	0	60	36	6	34	22	1.81
65623--65701	36	2.2	36	90	0	122	35	8	35	20	1.84
65623--65705	12	6.9	12	83	0	94	36	8	34	20	1.83
67171--67796	183	3.4	183	97	0	1146	36	14	16	33	1.89
70274--70327	23	2.3	23	93	0	90	37	5	16	40	1.72
70757--70793	18	2.1	18	89	0	56	32	5	10	51	1.60
70749--70795	24	2.0	24	86	0	67	34	4	14	46	1.64
71050--71136	39	2.2	39	91	0	147	48	19	13	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71557--71629	23	3.2	23	88	0	101	34	4	21	39	1.73
71988--72060	23	3.2	23	88	0	101	34	4	21	39	1.73
71346--72834	432	3.5	433	98	0	2850	40	7	12	39	1.72
72420--72492	23	3.2	23	88	0	101	34	4	21	39	1.73
77258--77320	11	5.9	11	69	14	51	39	1	3	55	1.25
79790--79947	79	2.0	79	91	1	255	36	9	19	34	1.84
80017--80041	7	3.6	7	100	0	50	16	0	12	72	1.13
99084--99242	60	2.7	56	77	10	140	32	27	22	17	1.96
106606--106695	46	2.0	46	88	0	135	23	21	11	44	1.84
106991--107202	55	3.9	54	86	4	300	36	14	11	37	1.82
106987--107197	109	1.9	110	90	0	334	37	15	10	36	1.81
107175--107230	28	2.0	28	96	0	103	26	14	17	41	1.88
107121--107285	83	2.0	82	91	1	267	33	14	13	38	1.86
107203--108475	55	23.2	55	92	1	2088	34	17	12	36	1.87
109322--109384	28	2.2	28	97	0	117	22	23	3	50	1.63
110793--110946	2	81.5	2	69	17	62	40	0	3	55	1.23
110920--110973	9	6.3	9	75	10	51	37	0	1	61	1.07
110926--110990	16	4.1	17	70	18	59	32	0	1	66	1.01
110789--110989	32	6.6	30	73	15	146	38	0	3	57	1.19
111808--111878	24	2.9	24	91	2	97	39	14	18	28	1.89
111823--111878	24	2.3	24	100	0	112	37	16	17	28	1.91
119289--119318	6	5.0	6	95	0	51	36	16	30	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119390--119439	24	2.1	23	81	3	55	52	4	40	4	1.39
122951--123024	37	2.0	37	97	0	139	27	12	13	47	1.78

Tables:   1

The End!