genome.fa.s2774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002774.1 Hibiscus syriacus cultivar Beakdansim tig00005716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95423

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4517--4541	13	1.9	13	100	0	50	8	0	24	68	1.16
9098--10273	182	6.6	182	84	6	1506	44	13	15	27	1.83
9359--10203	162	4.9	163	77	14	752	43	12	15	28	1.83
9156--10203	344	3.0	343	91	3	1622	44	13	15	27	1.83
9521--10273	178	4.2	181	87	3	1058	43	13	15	27	1.84
9500--10235	359	2.0	360	91	2	1212	44	13	15	27	1.83
10663--10729	19	3.6	18	87	4	89	47	0	14	37	1.45
11977--12034	24	2.5	24	75	5	66	39	0	6	53	1.28
12264--12298	18	1.9	18	100	0	70	34	5	51	8	1.56
17821--17852	13	2.5	13	95	5	57	46	18	18	15	1.84
23840--23875	15	2.4	15	100	0	72	13	27	25	33	1.94
24125--25180	523	2.0	523	98	0	2040	32	16	18	31	1.94
29231--29286	23	2.4	23	75	0	67	35	0	46	17	1.49
40246--40271	3	8.7	3	100	0	52	69	0	30	0	0.89
44857--44892	17	2.2	17	90	5	56	52	2	0	44	1.15
49198--49257	31	1.9	32	83	10	79	51	3	10	35	1.52
50051--50089	20	2.0	20	85	10	53	53	10	5	30	1.56
53131--53215	34	2.5	34	98	0	161	40	0	0	60	0.97
56241--56309	5	13.8	5	100	0	138	40	0	18	40	1.51
64288--64335	24	2.0	24	91	0	78	27	14	31	27	1.95
67691--67736	20	2.2	21	80	3	58	39	2	2	56	1.24
68176--68226	15	3.4	15	97	0	93	37	5	15	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68170--68242	30	2.5	29	82	10	103	41	6	17	34	1.76
68170--68242	15	4.9	15	83	9	80	41	6	17	34	1.76
68401--68499	49	2.0	50	80	9	114	47	2	0	50	1.12
68449--68618	88	1.9	86	81	9	200	45	0	4	50	1.23
68596--68647	11	4.6	11	74	11	52	50	1	1	46	1.23
68647--68692	17	2.7	18	80	12	53	43	2	0	54	1.12
68633--68780	51	2.8	53	79	16	148	50	1	0	47	1.14
68713--68766	14	3.4	16	72	20	51	48	0	1	50	1.11
68741--68797	22	2.6	22	83	5	71	57	0	0	42	0.98
68990--69108	42	2.8	42	90	0	193	47	17	17	17	1.84
71084--71139	27	2.1	27	83	12	71	42	21	12	23	1.86
72532--72666	21	6.4	21	69	14	82	35	26	17	20	1.94
72532--72658	65	2.0	65	91	0	209	36	25	17	20	1.94
72520--72644	19	6.1	19	67	17	70	36	24	18	20	1.95
72597--72674	40	2.0	40	89	0	120	34	23	19	23	1.96
72594--72677	19	4.2	19	76	8	78	34	23	17	23	1.96
73021--73088	26	2.7	26	84	6	77	52	0	4	42	1.21
73184--73242	27	2.1	27	84	9	73	45	0	6	47	1.29
74184--74219	15	2.4	15	85	0	54	33	2	0	63	1.08
76698--76728	14	2.2	14	100	0	62	16	12	41	29	1.85
77515--77553	19	2.1	19	95	0	69	41	17	10	30	1.83
80326--80376	21	2.4	21	93	0	93	7	37	21	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86532--86787	4	60.8	4	71	21	161	23	8	0	67	1.17
86531--86787	25	10.6	25	86	9	342	23	8	0	67	1.18
86536--86786	21	11.7	21	85	11	273	23	8	0	67	1.17
90372--90411	20	1.9	22	90	10	66	37	40	10	12	1.77
92695--92731	18	2.1	18	94	0	65	35	10	8	45	1.69
92998--93074	22	3.8	22	67	22	78	31	27	14	27	1.95
94761--94817	18	2.9	19	75	14	71	29	10	12	47	1.74

Tables:   1

The End!