genome.fa.s2775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002775.1 Hibiscus syriacus cultivar Beakdansim tig00005717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86251

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4811--4882	27	2.7	27	95	2	128	29	23	11	36	1.89
8387--8438	10	5.3	10	74	4	52	71	0	0	28	0.87
8384--8428	3	15.7	3	86	13	60	71	0	0	28	0.87
8384--8428	13	3.9	12	86	13	60	71	0	0	28	0.87
8387--8440	16	3.4	16	84	0	63	70	0	0	29	0.88
9983--10032	23	2.2	22	80	19	59	46	0	0	54	1.00
24728--25124	38	10.5	37	74	14	253	44	7	3	45	1.48
24732--25076	112	3.1	107	77	13	277	44	6	3	46	1.46
24915--25124	74	2.8	72	81	12	196	43	8	2	45	1.48
25706--26621	84	11.0	84	79	6	940	25	20	24	29	1.99
25691--26621	335	2.8	325	85	5	1170	24	20	24	30	1.99
25691--26621	165	5.6	164	85	4	1140	24	20	24	30	1.99
30148--30181	2	17.0	2	100	0	68	50	0	0	50	1.00
30395--30554	15	10.2	15	65	23	55	68	1	5	24	1.21
30406--30446	11	3.6	11	87	6	55	65	4	4	24	1.32
30470--30573	6	18.2	6	68	26	50	66	0	3	28	1.16
30465--30573	24	4.3	24	73	22	82	66	0	3	28	1.14
31130--31231	37	2.8	37	89	0	141	31	14	13	40	1.85
31841--33646	106	17.0	106	91	0	2790	23	17	24	34	1.96
34451--34527	22	3.5	22	94	0	136	20	14	27	37	1.91
35163--35210	10	4.8	10	82	14	55	0	8	8	83	0.82
35153--35207	17	3.3	17	82	9	60	0	9	9	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39837--39973	13	10.9	12	68	20	50	70	2	4	21	1.18
40465--40505	11	3.6	11	87	6	55	65	4	4	24	1.32
40589--40633	12	3.7	12	81	3	54	66	0	4	28	1.11
41186--41287	37	2.8	37	87	0	141	32	13	12	41	1.83
43773--43821	3	16.3	3	100	0	98	67	0	0	32	0.91
43857--43907	23	2.1	24	82	10	59	78	0	17	3	0.90
44097--44133	4	9.2	4	87	0	56	70	0	2	27	1.01
44627--44678	24	2.1	26	82	13	65	7	7	28	55	1.56
45198--45570	37	10.4	34	70	18	181	46	6	2	44	1.42
45391--45417	12	2.2	12	100	0	54	40	7	0	51	1.30
45277--45487	67	3.1	67	75	11	187	43	5	3	47	1.42
45383--45452	30	2.3	30	87	7	97	42	5	1	50	1.35
45224--45525	104	2.9	102	78	10	297	45	6	2	45	1.43
45461--45521	12	5.1	12	72	20	56	49	8	0	42	1.32
45415--45570	76	2.1	74	85	9	210	46	8	0	44	1.38
45984--46013	15	2.0	15	100	0	60	46	0	0	53	1.00
48172--48256	38	2.2	38	85	4	109	43	11	22	22	1.85
48297--48338	18	2.2	20	83	8	52	30	4	0	64	1.14
49157--49209	27	2.0	27	100	0	106	35	3	45	15	1.64
49526--49568	19	2.3	19	79	0	50	18	20	2	58	1.50
53071--53128	3	18.7	3	89	7	89	32	0	0	67	0.91
53066--53128	22	2.9	22	90	4	92	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54514--54570	29	2.0	29	82	6	71	26	1	5	66	1.22
54565--54594	3	10.0	3	92	0	51	33	3	0	63	1.11
55422--55483	8	7.5	8	71	7	52	16	4	3	75	1.10
57047--57100	14	3.8	14	78	4	54	24	12	9	53	1.68
58967--59032	34	1.9	34	87	6	98	80	0	16	3	0.84
63287--63426	54	2.6	54	91	2	219	35	16	22	25	1.95
63791--63845	22	2.5	22	84	0	83	34	12	12	40	1.82
64281--64805	113	4.6	113	93	1	865	38	14	18	29	1.90
65083--65151	3	22.0	3	85	8	93	33	0	0	66	0.92
65067--65151	28	3.0	29	81	14	106	31	0	0	68	0.90
66536--66592	29	2.0	29	82	6	71	26	1	5	66	1.22
66587--66622	3	12.0	3	87	0	54	33	5	0	61	1.19
68690--68742	27	2.0	27	92	7	90	39	3	41	15	1.65
69074--69114	6	6.7	6	86	5	55	19	19	0	60	1.36
69056--69114	25	2.3	26	85	5	77	18	22	1	57	1.49
71638--71690	27	2.0	27	88	0	79	67	0	1	30	1.01
73760--73803	13	3.5	13	90	6	72	6	34	0	59	1.24
78650--78725	37	2.0	38	97	2	145	34	35	10	19	1.86

Tables:   1

The End!