Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002776.1 Hibiscus syriacus cultivar Beakdansim tig00005718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99201

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8664--9030
131
2.8
130
88
2
520
31
11
16
40
1.84
12256--12298
19
2.4
19
84
7
63
25
6
0
67
1.15
12476--12501
6
4.3
6
100
0
52
0
15
50
34
1.45
17603--17654
3
17.0
3
96
4
95
67
0
32
0
0.91
25401--25451
21
2.5
21
93
3
86
27
13
31
27
1.94
31512--31584
32
2.3
32
75
0
74
38
13
12
35
1.83
31644--31696
20
2.7
20
84
0
61
49
15
9
26
1.74
33047--33077
15
2.1
15
93
0
53
38
9
12
38
1.77
41164--41205
21
2.1
21
82
8
52
47
0
2
50
1.14
42975--43043
6
10.4
7
76
16
51
59
0
0
40
0.97
42975--43042
12
5.4
13
87
3
70
58
0
0
41
0.98
42982--43043
3
20.0
3
83
6
79
61
0
0
38
0.96
59726--59761
17
2.1
17
89
0
54
38
11
0
50
1.38
68115--68171
31
1.9
28
86
10
78
54
0
5
40
1.23
68482--68587
39
2.7
39
69
13
92
41
3
16
37
1.67
68601--68642
20
2.1
20
95
0
75
73
0
4
21
1.01
69257--69310
20
2.7
19
75
8
63
33
31
18
16
1.93
69297--69429
20
6.5
21
69
17
82
36
23
18
22
1.95
69360--69557
20
9.8
20
73
6
112
38
23
18
19
1.93
69360--69632
40
6.8
40
82
7
232
38
23
17
20
1.93
69421--69632
41
5.2
41
89
1
302
38
23
17
20
1.93
69421--69634
20
10.6
20
74
6
189
37
23
18
20
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70195--70291
20
4.8
20
81
9
108
51
19
17
11
1.75
70210--70286
41
1.9
40
89
2
118
49
19
19
11
1.78
70210--70302
19
4.7
19
81
6
105
49
21
18
10
1.77
70303--70391
20
4.8
20
73
18
77
11
23
19
46
1.82
73325--73360
14
2.6
14
90
0
54
30
0
22
47
1.52
73462--73516
19
2.8
19
91
2
83
43
16
23
16
1.87
73517--73656
53
2.6
53
82
3
165
15
21
18
44
1.87
73517--73603
19
4.8
19
75
15
94
13
20
17
48
1.81
73608--73662
20
2.8
20
83
5
67
23
20
21
34
1.97
73977--74022
19
2.4
19
96
0
83
17
19
15
47
1.82
73954--74075
52
2.3
54
84
4
158
18
23
18
39
1.92
74027--74081
20
2.8
20
94
0
92
21
23
23
30
1.99
77408--77639
20
11.4
20
74
7
182
21
16
24
38
1.93
77408--77639
41
5.7
40
83
3
277
21
16
24
38
1.93
77409--77639
121
1.9
122
88
2
349
21
16
24
38
1.92
77648--77695
20
2.4
20
83
13
55
14
14
22
47
1.81
77750--77803
20
2.7
19
75
8
63
16
18
31
33
1.93
78795--78832
17
2.2
17
86
9
51
23
5
5
65
1.34
83408--83777
184
2.0
184
93
1
634
45
9
3
41
1.54
92568--92620
27
2.0
27
85
7
72
24
11
18
45
1.82
97593--97632
15
2.7
15
84
3
55
27
20
25
27
1.99

Tables:   1

The End!