genome.fa.s2777.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002777.1 Hibiscus syriacus cultivar Beakdansim tig00005719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227343

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7205--7232	3	9.3	3	100	0	56	67	0	32	0	0.91
10286--10395	31	3.5	31	88	0	130	23	19	18	39	1.92
24382--24718	131	2.6	129	80	7	385	40	17	10	32	1.83
26783--26828	3	15.3	3	81	0	56	65	4	0	30	1.12
26993--27025	16	2.1	16	100	0	66	42	12	21	24	1.86
29933--29966	15	2.3	15	94	0	59	47	23	11	17	1.81
30131--30155	4	6.2	4	100	0	50	76	0	0	24	0.80
30153--30220	2	33.5	2	81	14	77	51	4	1	42	1.31
30105--30220	8	14.5	8	78	13	78	54	3	2	39	1.31
31443--31473	3	10.3	3	100	0	62	32	0	0	67	0.91
32907--33355	229	2.0	227	95	0	799	45	8	7	39	1.62
33420--33464	20	2.2	20	92	7	74	53	11	17	17	1.72
33586--33632	20	2.4	19	82	10	67	53	10	17	19	1.72
33595--33637	20	2.3	19	88	11	63	51	11	16	20	1.75
35860--35924	21	3.1	21	80	6	69	40	15	29	15	1.88
35957--36022	33	2.0	33	90	0	105	28	0	48	22	1.51
40387--40433	22	2.2	20	85	11	58	74	4	0	21	0.99
40387--40433	21	2.2	21	85	7	60	74	4	0	21	0.99
41421--41484	25	2.6	24	87	7	94	51	9	0	39	1.34
42211--42294	42	2.0	42	97	0	159	28	4	29	36	1.78
43759--44014	135	1.9	134	89	2	397	44	7	13	34	1.71
44683--44722	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45264--45308	21	2.2	21	84	11	58	40	11	6	42	1.67
47154--47267	43	2.7	43	80	4	122	34	17	21	26	1.96
47358--47443	45	1.9	45	90	0	136	27	18	23	30	1.98
67169--67206	3	13.0	3	88	5	60	36	0	0	63	0.95
70960--71038	31	2.5	31	97	0	149	24	13	17	44	1.85
71049--71113	16	4.1	16	87	0	94	58	18	12	10	1.62
71045--71111	26	2.7	26	72	17	63	59	16	11	11	1.60
76498--76522	13	1.9	13	100	0	50	80	0	4	16	0.87
77856--78597	389	1.9	389	99	0	1466	31	13	21	33	1.93
80892--80929	18	2.1	19	95	5	69	28	0	0	71	0.87
81013--81061	2	24.5	2	100	0	98	51	0	0	48	1.00
83868--83912	23	2.0	23	86	0	63	26	28	24	20	1.99
83893--84194	149	2.0	149	96	0	559	34	19	17	28	1.94
85005--85039	18	1.9	18	88	11	54	22	17	5	54	1.64
85619--85662	21	2.1	21	86	0	61	15	25	27	31	1.96
88900--89201	149	2.0	149	96	0	559	34	19	17	28	1.94
90010--90044	18	1.9	18	88	11	54	22	17	5	54	1.64
90624--90668	21	2.1	21	87	0	63	15	24	28	31	1.96
92287--92336	21	2.4	21	80	10	66	0	38	16	46	1.47
103261--103312	27	1.9	27	92	0	86	26	17	11	44	1.83
107013--107053	3	14.0	3	89	5	66	36	0	0	63	0.95
107254--107317	21	3.0	21	76	19	60	62	1	1	34	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108041--108070	15	2.0	15	93	0	51	10	40	30	20	1.85
110715--110793	31	2.5	31	95	0	140	24	15	17	43	1.87
110810--110869	16	3.8	16	88	0	93	58	16	11	13	1.63
113102--113152	2	25.5	2	100	0	102	50	0	0	49	1.00
116294--116318	13	1.9	13	100	0	50	80	0	4	16	0.87
119567--119640	31	2.4	31	81	0	85	36	18	10	33	1.86
122685--122732	20	2.3	20	86	13	62	75	0	2	22	0.91
122683--122744	21	3.0	20	83	13	72	74	1	1	22	1.00
126282--126360	31	2.5	31	93	0	140	22	13	17	45	1.84
126371--126435	16	4.1	16	87	0	94	58	18	12	10	1.62
126367--126433	26	2.7	26	72	17	63	59	16	11	11	1.60
127518--127559	14	3.0	14	92	0	57	52	23	14	9	1.71
131829--131853	13	1.9	13	100	0	50	80	0	4	16	0.87
135105--135178	31	2.4	31	76	0	76	35	18	12	33	1.88
137373--137397	4	6.2	4	100	0	50	24	24	0	52	1.48
138222--138269	20	2.3	20	86	13	62	75	0	2	22	0.91
138220--138281	21	3.0	20	83	13	72	74	1	1	22	1.00
141192--141257	33	2.0	32	88	8	98	36	15	13	34	1.87
142171--142316	55	2.6	55	80	6	136	28	23	17	30	1.97
145410--145539	64	2.0	64	96	0	242	31	9	21	37	1.85
150734--150880	55	2.7	55	82	4	163	27	24	17	30	1.97
157620--157688	28	2.5	28	97	0	129	52	10	14	23	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162805--162876	17	4.2	17	78	3	72	40	9	12	37	1.76
169065--169123	30	2.0	29	83	3	73	47	25	0	27	1.52
170836--170907	17	4.2	17	78	3	72	40	9	12	37	1.76
172858--172903	24	1.9	24	100	0	92	30	13	15	41	1.85
173922--174141	95	2.3	96	79	8	243	33	15	19	31	1.93
175602--175651	20	2.5	21	71	15	52	32	20	8	40	1.81
179369--179611	45	5.9	45	70	20	145	30	23	10	35	1.89
179418--179487	34	2.2	31	76	14	77	30	21	10	38	1.86
179428--179639	34	5.6	34	69	22	127	30	24	11	34	1.90
179380--179639	79	3.3	79	91	0	412	29	23	11	35	1.90
182138--182390	79	3.2	79	87	2	355	28	23	10	37	1.88
182455--182496	3	14.0	3	100	0	84	66	0	33	0	0.92
184004--184034	16	1.9	16	93	0	53	48	0	9	41	1.36
184585--184626	22	2.0	21	86	9	59	30	23	21	23	1.99
186074--186718	182	3.5	182	88	1	927	43	13	16	26	1.85
188573--188628	24	2.5	22	77	13	60	39	0	8	51	1.33
188866--188899	9	3.8	9	92	0	59	38	8	52	0	1.33
188934--188970	15	2.5	15	95	0	65	21	13	45	18	1.84
189326--189364	18	2.2	18	100	0	78	56	0	38	5	1.22
189667--189702	17	2.1	17	100	0	72	50	8	11	30	1.67
190678--190722	23	2.0	23	95	0	81	37	20	8	33	1.83
190594--190756	87	1.9	87	96	0	299	31	15	12	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196055--196105	19	2.8	18	79	5	57	13	29	19	37	1.90
196050--196106	18	3.1	18	75	5	69	14	28	19	38	1.90
200065--200119	22	2.4	23	76	11	60	54	12	14	18	1.71
220031--220066	16	2.3	16	90	4	56	8	13	0	77	0.98
223974--224005	16	2.0	16	93	0	55	9	6	9	75	1.20
227181--227225	23	2.0	21	87	8	63	22	4	15	57	1.56

Tables:   1

The End!