genome.fa.s2778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002778.1 Hibiscus syriacus cultivar Beakdansim tig00005722_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121302

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4981--5022	22	1.9	22	95	0	75	73	0	4	21	1.01
6285--6349	28	2.3	28	94	0	121	29	16	29	24	1.97
7588--7640	8	6.5	8	87	12	65	86	0	0	13	0.56
7588--7651	14	4.6	14	76	3	67	84	1	0	14	0.70
7588--7648	9	6.9	9	87	7	72	85	1	0	13	0.68
13218--13258	21	1.9	22	90	5	66	75	0	4	19	0.98
13922--14069	76	2.0	75	86	4	208	58	7	3	30	1.42
15291--15343	21	2.5	22	81	6	65	54	1	7	35	1.40
30075--30119	15	3.0	15	84	9	65	46	6	0	46	1.29
32167--32217	19	2.9	17	75	11	57	43	11	9	35	1.75
47913--47986	18	4.2	17	70	14	60	40	10	13	35	1.80
51535--51575	17	2.4	17	91	0	73	46	0	17	36	1.48
52889--53198	44	7.0	44	86	1	415	39	10	23	26	1.87
52889--53198	132	2.3	132	87	3	462	39	10	23	26	1.87
59393--59443	21	2.6	19	81	9	59	31	11	21	35	1.90
60005--60219	44	4.9	44	82	4	238	42	10	20	25	1.84
60005--60219	88	2.4	88	81	7	274	42	10	20	25	1.84
61260--61293	10	3.3	10	91	4	50	29	8	8	52	1.62
64817--64906	3	29.7	3	95	2	153	64	0	2	33	1.06
65040--65791	114	6.6	112	89	6	1002	29	19	13	37	1.90
66441--66914	83	5.7	83	90	3	749	37	22	12	27	1.90
66443--66914	165	2.8	166	92	2	781	37	22	12	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66442--66914	248	1.9	248	93	1	824	37	21	12	27	1.90
79369--79407	20	1.9	21	89	5	62	48	2	2	46	1.29
80301--80347	23	2.0	23	88	8	69	0	17	10	72	1.12
80855--80937	3	27.7	3	97	0	157	65	0	1	33	1.01
81593--81674	17	4.6	18	76	8	78	45	14	8	31	1.75
81623--81673	18	2.8	18	82	11	68	52	13	5	27	1.63
87386--87482	42	2.3	40	84	5	113	34	6	31	27	1.82
87424--87494	22	3.4	21	84	3	90	32	4	32	30	1.77
87386--87493	42	2.6	40	78	7	108	34	5	32	27	1.80
87386--87493	20	5.2	20	78	8	92	34	5	32	27	1.80
87455--87500	21	2.2	21	84	7	58	41	10	21	26	1.86
90249--90308	21	3.0	20	83	9	77	40	3	31	25	1.72
90253--90332	41	2.0	41	82	0	97	35	6	31	27	1.82
94694--94796	49	2.1	49	92	0	170	20	21	26	32	1.98
94779--94815	16	2.3	16	100	0	74	21	32	18	27	1.97
94730--94853	64	1.9	65	90	1	196	20	24	26	28	1.99
97772--97808	16	2.2	17	90	4	58	56	16	13	13	1.67
98699--98769	3	23.7	3	97	0	133	64	0	1	33	1.02
99425--99509	35	2.4	35	82	3	100	45	14	8	31	1.74
99425--99505	17	4.6	18	76	11	78	44	14	8	32	1.76
99455--99503	19	2.8	17	85	11	64	53	14	6	26	1.64
105216--105312	42	2.3	40	84	5	113	34	6	31	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105254--105324	22	3.4	21	84	3	90	32	4	32	30	1.77
105216--105323	42	2.6	40	78	7	108	34	5	32	27	1.80
105216--105323	20	5.2	20	78	8	92	34	5	32	27	1.80
105285--105330	21	2.2	21	84	7	58	41	10	21	26	1.86
108078--108137	21	3.0	20	83	9	77	40	3	31	25	1.72
108082--108161	41	2.0	41	82	0	97	35	6	31	27	1.82
112522--112624	49	2.1	49	92	0	170	20	21	26	32	1.98
112607--112643	16	2.3	16	100	0	74	21	32	18	27	1.97
112558--112681	64	1.9	65	90	1	196	20	24	26	28	1.99
115596--115632	16	2.2	17	90	4	58	56	16	13	13	1.67
116178--116392	106	2.0	108	93	5	375	43	8	17	30	1.79
117368--117402	14	2.5	14	90	0	52	40	2	31	25	1.70
118239--118308	19	3.7	20	83	11	94	70	0	2	27	1.02
119063--119097	17	2.1	17	88	0	52	45	20	0	34	1.51
121147--121255	55	2.0	53	87	3	155	33	31	21	13	1.92

Tables:   1

The End!