genome.fa.s2779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002779.1 Hibiscus syriacus cultivar Beakdansim tig00005726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54810

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2649--2685	20	1.9	19	89	10	58	45	10	24	18	1.81
6947--8042	275	4.0	277	88	4	1626	40	10	7	41	1.67
6947--8042	549	2.0	543	89	4	1697	40	10	7	41	1.67
12551--12590	20	2.1	18	86	13	53	30	7	15	47	1.72
22692--25539	84	34.4	84	75	6	1962	34	16	18	29	1.93
23299--25965	168	15.9	166	73	9	1363	34	16	19	30	1.94
22521--25965	252	13.8	250	73	8	1888	34	16	19	30	1.94
24989--25442	241	1.9	240	85	4	637	34	16	20	29	1.94
25520--25559	18	2.2	18	100	0	80	22	32	0	45	1.53
25683--25965	86	3.3	83	81	4	262	30	14	23	31	1.95
25538--25965	84	5.1	83	75	6	304	30	13	22	32	1.93
27474--28319	84	10.1	84	76	3	664	32	16	19	30	1.95
29219--29280	25	2.5	26	84	10	76	45	16	19	19	1.86
29506--29552	23	2.0	24	91	4	78	61	6	4	27	1.39
31666--32058	84	5.0	76	76	14	303	33	13	21	30	1.93
31741--32390	84	7.9	84	77	6	395	33	14	20	30	1.93
31741--32392	168	3.9	165	75	9	519	33	15	20	30	1.93
32447--32632	95	2.0	95	87	0	273	31	17	19	30	1.95
32541--33021	83	5.7	83	78	6	486	32	15	22	29	1.94
32541--33014	253	1.9	251	82	5	607	32	15	22	29	1.95
34455--34551	29	3.3	29	68	11	70	44	7	17	30	1.76
39885--39919	17	2.1	17	100	0	70	28	5	22	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41778--41814	17	2.2	17	95	0	65	18	10	18	51	1.75
45751--45835	32	2.7	32	85	8	104	22	9	25	42	1.83
45801--45877	32	2.4	32	76	4	84	22	6	27	44	1.77
46065--46190	16	7.9	16	69	7	58	12	10	26	50	1.73
48850--48888	13	3.0	13	92	0	60	43	5	25	25	1.75
50767--50819	20	2.7	20	93	0	88	24	16	24	33	1.96
51721--51768	20	2.4	20	82	0	60	29	22	18	29	1.98
52486--52515	12	2.5	12	94	0	51	26	16	3	53	1.59

Tables:   1

The End!