Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002780.1 Hibiscus syriacus cultivar Beakdansim tig00005731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62449

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--101
5
20.4
5
97
2
195
60
19
0
19
1.36
461--511
21
2.4
21
77
9
59
11
17
27
43
1.84
378--549
92
1.9
92
87
0
254
24
16
25
33
1.95
378--569
92
2.1
92
85
1
251
23
15
27
33
1.95
3801--3835
15
2.3
15
95
0
61
42
17
0
40
1.49
6594--6708
60
1.9
60
85
1
160
33
24
10
31
1.89
8364--8388
12
2.1
12
100
0
50
40
24
8
28
1.83
8566--8592
10
2.7
10
100
0
54
88
0
11
0
0.50
9802--9839
19
2.0
19
89
0
58
57
0
0
42
0.98
10346--10413
30
2.3
30
89
0
100
33
10
11
44
1.75
12272--12301
15
2.0
15
93
0
51
46
0
23
30
1.52
21449--21489
6
6.8
6
100
0
82
34
48
17
0
1.47
23379--23427
21
2.3
21
89
6
73
69
4
4
22
1.23
23860--23905
22
2.0
23
87
4
67
36
8
2
52
1.45
26019--26080
31
2.0
31
87
0
88
45
16
16
22
1.85
28701--28748
20
2.4
20
86
6
62
50
0
2
47
1.12
29409--29450
13
3.0
15
80
16
54
50
0
0
50
1.00
32309--32381
36
2.0
37
82
10
89
49
4
0
46
1.21
32487--32518
14
2.3
14
100
0
64
31
18
9
40
1.83
32820--32905
42
2.0
42
93
0
145
46
12
5
34
1.66
33064--33142
42
1.9
41
92
2
131
44
11
12
31
1.78
36942--37009
22
3.0
22
84
2
91
30
22
10
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42839--42881
21
2.0
21
90
0
68
32
27
23
16
1.96
42909--42946
20
1.9
20
88
0
58
23
34
31
10
1.89
43429--43654
103
2.2
103
93
0
389
26
12
24
36
1.91
43663--43725
23
2.7
23
85
0
81
20
25
26
26
1.99
44426--44485
22
2.7
22
84
0
75
35
20
10
35
1.86
45762--45798
18
2.1
18
100
0
74
37
27
16
18
1.92
55306--55334
15
1.9
15
100
0
58
48
27
6
17
1.72
55431--55496
26
2.5
26
73
9
62
54
1
1
42
1.18
55484--55525
20
2.2
19
87
12
59
54
0
0
45
0.99
55501--55846
181
1.9
182
91
4
565
42
3
8
45
1.51
56094--56134
8
4.7
9
80
17
50
78
0
12
9
0.98
56094--56132
19
2.1
19
85
9
53
82
0
10
7
0.86
59272--59314
22
2.0
22
90
0
68
18
18
20
41
1.90
60550--60622
12
5.9
13
74
19
68
73
8
16
1
1.13
60595--60636
10
4.0
10
82
11
57
76
9
14
0
1.02
60550--60636
22
3.7
22
81
15
95
74
8
16
1
1.10
61803--61900
38
2.6
36
76
9
106
30
20
7
41
1.79
61840--61976
66
2.1
67
88
1
204
31
17
8
43
1.78

Tables:   1

The End!