genome.fa.s2781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002781.1 Hibiscus syriacus cultivar Beakdansim tig00005735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72942

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2065--2555	131	3.8	131	83	2	587	40	15	10	32	1.82
3153--3222	29	2.5	27	82	13	79	58	7	11	22	1.57
4673--4703	3	10.0	3	93	6	53	64	0	0	35	0.94
10497--10533	18	1.9	19	89	10	58	40	5	5	48	1.49
15731--15777	19	2.5	19	100	0	94	38	14	4	42	1.66
15731--15777	9	5.0	9	80	10	58	38	14	4	42	1.66
30966--31072	45	2.4	42	76	13	106	30	14	22	31	1.94
31056--31106	19	2.7	19	79	8	61	25	13	35	25	1.93
31120--31159	21	1.9	21	94	0	71	22	15	30	32	1.94
33712--33791	24	3.5	23	75	14	85	28	23	25	22	1.99
33689--33811	44	2.8	42	74	12	113	25	21	27	26	1.99
39227--39390	64	2.5	65	82	4	197	25	16	25	32	1.96
39288--39326	19	2.1	19	90	0	60	25	17	38	17	1.92
39352--39391	21	1.9	21	94	0	71	22	15	30	32	1.94
40354--40426	36	2.0	36	94	0	128	27	8	19	45	1.78
40630--40685	21	2.7	21	80	2	60	28	16	17	37	1.91
47561--47589	8	3.8	8	95	4	51	24	0	0	75	0.80
47706--47817	49	2.3	49	98	0	215	22	25	27	25	2.00
48379--48532	56	2.8	56	82	5	195	20	11	22	46	1.82
49035--49064	15	1.9	16	93	6	53	3	23	6	66	1.30
49564--49615	26	2.0	26	100	0	104	34	19	11	34	1.88
50625--50667	18	2.3	19	88	4	61	62	4	4	27	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51423--51609	59	3.2	57	79	15	177	59	10	13	16	1.61
51449--51672	29	7.6	29	77	12	176	60	10	12	16	1.58
51449--51593	58	2.5	58	87	8	199	62	9	12	15	1.55
56287--56327	17	2.4	17	100	0	82	48	0	21	29	1.50
56552--56905	162	2.2	162	88	3	507	34	14	16	34	1.89
56552--56941	54	7.2	54	84	5	430	34	14	16	34	1.90
59194--59226	17	1.9	17	93	0	57	39	9	6	45	1.61
60909--60937	14	2.0	15	93	6	51	10	0	27	62	1.28
66263--66590	43	7.7	42	81	7	279	25	15	25	33	1.95
66263--66506	85	2.8	85	83	3	303	27	14	24	33	1.94
66237--66533	128	2.3	129	80	6	316	28	15	23	32	1.95
66237--66589	128	2.7	128	78	6	313	26	15	24	33	1.95
66467--66631	85	1.9	85	83	2	215	20	17	26	35	1.95
66296--66590	128	2.3	127	80	4	317	25	16	24	33	1.96
66282--66631	43	8.2	43	80	5	188	24	16	26	33	1.95
67032--67095	21	3.0	21	86	4	76	4	32	20	42	1.73
67045--67157	21	5.4	21	80	4	104	1	36	20	41	1.63
67066--67146	33	2.4	34	73	17	80	2	35	20	40	1.66

Tables:   1

The End!