Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002783.1 Hibiscus syriacus cultivar Beakdansim tig00005737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105818

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5011--5071
23
2.7
23
92
5
88
19
24
26
29
1.99
6819--6843
13
1.9
13
100
0
50
80
0
4
16
0.87
6812--6852
18
2.1
20
86
13
59
75
0
4
19
0.98
6917--6973
30
1.9
29
82
10
71
45
7
3
43
1.48
6940--7047
35
3.1
34
86
6
146
40
7
4
47
1.52
23215--23245
4
7.8
4
100
0
62
25
0
0
74
0.82
24629--24683
20
2.8
20
97
0
101
25
16
32
25
1.96
25057--25088
17
1.9
16
93
6
55
31
15
12
40
1.85
25356--25464
31
3.5
31
92
0
173
20
15
22
42
1.89
25358--25479
31
3.9
31
90
2
120
21
14
22
41
1.89
25356--25479
62
2.0
62
85
3
169
20
14
22
41
1.89
36393--36455
33
1.9
33
83
3
83
55
3
4
36
1.37
36700--36767
23
2.9
24
82
6
77
50
0
2
47
1.16
36728--36803
30
2.6
30
84
12
88
52
0
0
47
1.00
36754--36807
22
2.4
22
81
12
56
46
0
0
53
1.00
44681--44726
22
2.1
22
84
8
58
21
0
8
69
1.15
49114--49144
13
2.4
13
94
0
53
38
0
35
25
1.56
49695--49729
2
17.5
2
100
0
70
51
0
0
48
1.00
50966--51024
22
2.5
23
81
15
68
44
3
0
52
1.17
59483--59519
18
2.1
18
89
0
56
24
16
21
37
1.93
60615--60701
33
2.7
32
82
10
97
50
0
4
44
1.22
60683--60732
16
3.1
16
71
18
50
58
0
6
36
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60830--60894
25
2.9
23
70
23
57
41
9
7
41
1.65
60882--60926
23
2.0
23
90
0
72
51
4
4
40
1.42
60729--60998
145
1.9
146
84
2
373
46
8
5
39
1.58
66366--66413
19
2.5
20
89
3
71
33
12
4
50
1.59
73815--73851
14
2.4
16
86
8
51
45
2
40
10
1.53
74417--74444
14
2.0
14
100
0
56
50
7
21
21
1.72
79530--79914
194
2.0
188
91
4
619
39
10
12
37
1.78
80150--80272
40
3.1
40
89
2
194
31
8
13
46
1.73
80133--80259
39
3.2
39
89
2
200
33
7
14
45
1.71
83328--83360
16
2.1
16
100
0
66
51
6
6
36
1.51
88339--88422
31
2.8
31
85
5
102
41
2
14
41
1.58
90513--90559
19
2.5
19
92
0
76
17
21
31
29
1.96
92452--92558
44
2.4
44
87
0
142
28
17
22
31
1.97
96181--96220
20
2.0
21
85
5
55
25
17
10
47
1.78
99576--99657
22
4.0
20
75
18
80
31
19
25
23
1.98
101185--101252
23
3.0
23
84
0
91
17
23
26
32
1.97
102913--103069
65
2.4
65
82
4
183
31
17
22
28
1.97

Tables:   1

The End!