Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002784.1 Hibiscus syriacus cultivar Beakdansim tig00005738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60799

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1719--1844
69
1.9
65
86
6
180
29
24
18
27
1.98
3209--3260
20
2.5
21
84
9
63
38
25
0
36
1.56
9020--9065
24
1.9
24
86
0
65
73
0
15
10
1.08
10496--10608
44
2.6
44
94
0
190
28
15
15
40
1.88
10580--10871
130
2.2
131
80
1
318
33
18
15
32
1.92
11056--11094
3
13.0
3
100
0
78
33
0
0
66
0.92
14560--14621
27
2.3
27
97
0
115
61
1
3
33
1.22
14586--14637
21
2.5
20
76
11
52
57
0
1
40
1.10
15070--15100
11
2.8
11
100
0
62
45
9
0
45
1.36
15390--15476
33
2.6
33
96
0
156
19
40
24
16
1.91
16130--16190
3
21.0
3
82
12
74
63
0
1
34
1.04
16348--16944
73
8.1
74
91
3
943
32
21
19
25
1.97
16348--16944
147
4.0
147
93
2
955
32
21
19
25
1.97
17607--17658
22
2.4
22
83
3
70
38
11
15
34
1.83
18026--18158
54
2.5
55
82
4
155
33
18
13
34
1.90
21177--21232
17
3.4
16
79
13
60
0
17
0
82
0.68
21177--21233
24
2.3
25
88
8
82
0
19
0
80
0.71
26899--26962
27
2.3
29
89
10
114
60
0
3
35
1.12
28446--28508
3
22.0
3
80
9
69
60
1
1
36
1.16
28443--28504
20
3.1
20
88
4
81
58
1
1
38
1.18
28441--28507
23
2.9
24
87
12
97
58
1
1
38
1.17
31375--31520
74
2.0
75
90
1
231
42
20
7
29
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33737--33764
9
3.1
9
100
0
56
78
0
0
21
0.75
36328--36400
21
3.5
21
79
3
85
23
34
21
20
1.97
36804--36848
19
2.4
19
96
0
81
28
0
8
62
1.25
36914--36950
18
2.1
18
89
0
56
24
0
16
59
1.37
40935--40998
28
2.4
28
80
17
73
28
15
7
48
1.73
41063--41179
25
4.6
24
71
14
83
35
35
0
27
1.63
41056--41179
52
2.4
51
87
1
167
36
36
0
26
1.63
42273--42354
39
2.1
39
93
0
137
32
12
13
41
1.81
43076--43122
23
2.0
23
91
0
76
57
21
12
8
1.62
47809--47868
32
1.9
31
89
3
93
33
6
8
51
1.58
48780--48846
21
3.1
21
78
8
64
68
2
5
22
1.25
49451--49513
19
3.2
19
75
4
54
57
11
0
31
1.34
49416--49603
64
2.8
66
83
11
197
57
11
1
28
1.43
51294--51391
52
1.9
48
88
10
142
22
20
14
42
1.88
51432--51460
15
1.9
15
100
0
58
68
3
0
27
1.05
57122--57169
18
2.6
18
81
15
62
75
0
6
18
1.01
57797--57936
74
1.9
73
85
8
187
58
10
2
28
1.43
57782--57844
19
3.2
19
75
4
54
57
11
0
31
1.34
57818--57963
74
2.0
74
89
5
224
58
9
2
29
1.44

Tables:   1

The End!