genome.fa.s2785.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002785.1 Hibiscus syriacus cultivar Beakdansim tig00005740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81140

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469--751	51	5.3	55	83	10	360	33	17	12	36	1.88
469--751	106	2.7	108	86	9	381	33	17	12	36	1.88
846--909	32	2.0	32	91	8	105	23	31	14	31	1.94
10369--10439	34	2.1	33	82	12	83	40	2	4	52	1.36
10846--11102	2	128.0	2	88	6	243	48	2	41	8	1.46
12390--12430	22	1.9	21	90	5	64	24	0	4	70	1.06
13054--13083	2	15.0	2	100	0	60	50	0	0	50	1.00
14394--14744	43	8.2	43	77	7	227	28	17	24	29	1.97
14607--14744	42	3.2	44	75	11	112	29	19	23	26	1.98
15071--15127	21	2.7	21	97	0	105	0	38	22	38	1.55
15071--15153	21	4.0	21	87	0	103	1	38	20	39	1.60
15100--15190	21	4.3	21	81	2	94	1	40	20	37	1.60
17125--17249	60	2.1	59	88	2	187	24	20	13	41	1.88
18399--18502	42	2.5	42	76	7	106	35	21	18	25	1.95
18843--19030	57	3.3	57	98	0	358	51	12	5	29	1.63
20096--20203	41	2.6	40	77	18	105	25	21	19	33	1.97
33785--33812	13	2.2	13	100	0	56	42	42	0	14	1.45
33836--33887	21	2.6	20	79	8	52	42	28	1	26	1.66
33833--33905	20	3.7	20	75	14	62	42	26	4	27	1.73
34478--34554	21	3.7	21	82	3	84	51	5	11	31	1.60
37496--37794	56	5.3	56	91	0	481	34	16	11	37	1.85
38372--38425	26	2.1	26	100	0	108	29	31	3	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46734--46788	21	2.6	21	82	8	67	14	27	32	25	1.95
53942--54175	56	4.3	56	87	9	342	32	18	12	36	1.88
53942--54175	103	2.2	105	90	6	355	32	18	12	36	1.88
54613--54647	18	1.9	18	100	0	70	37	28	11	22	1.89
61590--61624	11	3.2	11	91	0	52	48	2	22	25	1.64
63548--63599	24	2.1	25	85	3	70	36	40	0	23	1.55
66368--66405	18	2.1	18	85	9	51	31	26	13	28	1.93
67606--67654	20	2.5	20	83	3	64	26	24	22	26	2.00
69570--69643	5	15.2	5	80	16	84	60	0	0	39	0.97
69556--69641	20	4.1	21	77	15	97	60	0	0	39	0.97
69558--69643	25	3.4	25	78	14	97	59	0	0	40	0.97
69649--69777	22	6.4	20	69	25	85	40	12	3	44	1.58
71353--71387	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1

The End!