Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002788.1 Hibiscus syriacus cultivar Beakdansim tig00005745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59638

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5257--5282
3
8.7
3
100
0
52
65
0
0
34
0.93
5775--5812
14
2.6
14
88
12
51
60
5
13
21
1.52
6260--6346
32
2.8
31
83
11
106
64
1
6
27
1.26
7594--7672
14
4.7
16
75
19
63
62
1
1
35
1.12
7594--7672
22
3.5
22
69
23
58
62
1
1
35
1.12
7581--7672
37
2.5
37
81
10
91
64
2
1
32
1.13
7581--7648
34
1.9
36
85
8
95
66
2
0
30
1.07
7680--7741
24
2.8
22
85
9
74
41
8
0
50
1.32
7733--7892
75
2.1
74
80
5
178
41
13
3
41
1.63
7771--7913
75
1.9
75
81
5
173
41
13
4
40
1.65
10028--10080
27
2.0
27
100
0
106
26
22
15
35
1.93
12965--12993
2
14.5
2
100
0
58
51
0
0
48
1.00
16624--16782
65
2.5
64
85
7
216
30
22
18
28
1.97
18181--18223
18
2.4
18
84
7
52
67
2
2
27
1.15
18264--18374
39
2.8
39
81
8
136
45
0
17
36
1.54
21908--22188
42
6.8
42
71
7
171
34
18
20
26
1.96
21911--22188
41
6.7
41
68
11
102
34
18
20
26
1.96
21951--22188
83
2.9
83
82
1
271
34
18
21
25
1.96
25548--25633
21
4.1
21
84
3
102
37
19
41
1
1.59
25556--25648
21
4.4
21
83
4
98
38
19
40
1
1.59
25986--26209
43
5.2
43
73
11
147
32
20
18
28
1.97
30542--30702
65
2.5
64
85
5
200
28
23
19
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37448--37474
2
13.5
2
100
0
54
48
0
0
51
1.00
37548--37583
17
2.1
17
100
0
72
36
0
19
44
1.51
37545--37596
17
2.7
20
77
22
65
32
0
28
38
1.57
37933--38143
65
3.3
64
78
10
216
30
23
19
27
1.98
37983--38162
65
2.8
63
81
7
200
28
22
20
28
1.98
39149--39200
19
2.6
20
85
11
63
65
3
1
28
1.21
39188--39263
25
3.0
25
74
14
66
67
5
3
23
1.29
43626--43812
36
5.2
36
79
10
177
45
4
7
42
1.53
43626--43785
71
2.3
70
78
6
162
44
5
8
42
1.56
45693--45750
20
2.9
20
86
0
71
15
8
17
58
1.61
45837--45966
23
5.7
23
96
0
226
24
13
26
34
1.93
46537--46583
19
2.5
19
86
3
60
59
0
8
31
1.27
46649--46699
27
1.9
26
84
11
68
45
3
3
47
1.40
47293--47332
21
1.9
21
84
0
53
55
0
0
45
0.99
48075--48110
18
2.0
18
94
0
63
44
16
13
25
1.85
49623--49663
18
2.3
18
91
4
66
29
34
17
19
1.94
50002--50034
17
2.0
17
88
5
50
45
15
3
36
1.61
50357--50476
53
2.3
53
97
0
222
30
20
18
31
1.96
55690--55719
15
1.9
16
93
6
53
66
3
30
0
1.07

Tables:   1

The End!