Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002789.1 Hibiscus syriacus cultivar Beakdansim tig00005747_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101783

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2519--2652
66
2.0
66
98
0
259
38
14
21
24
1.92
2832--2873
22
1.9
22
85
0
57
42
21
4
30
1.73
2831--2879
22
2.2
22
77
0
53
46
20
4
28
1.68
3179--3222
5
8.8
5
89
0
52
13
36
40
9
1.76
8753--8806
22
2.5
22
73
11
56
38
20
9
31
1.84
9099--9137
5
7.8
5
94
0
69
17
38
41
2
1.64
11057--11124
28
2.5
28
87
2
111
11
11
33
42
1.78
10855--11583
238
3.0
238
85
8
991
24
11
26
38
1.89
11290--11373
33
2.6
32
90
3
141
10
11
38
39
1.77
11545--11636
38
2.5
37
82
10
123
13
8
39
39
1.75
12174--12219
18
2.7
18
90
6
69
28
28
6
36
1.82
13111--13137
4
6.8
4
100
0
54
77
0
0
22
0.76
13190--13223
7
5.0
7
89
7
52
58
0
0
41
0.98
13191--13223
13
2.4
14
90
5
50
60
0
0
39
0.97
19464--19521
23
2.5
23
82
0
71
44
8
8
37
1.66
19359--19610
87
2.9
87
85
0
324
44
9
11
34
1.73
19480--19720
110
2.2
110
87
0
347
44
11
10
32
1.75
19563--19633
23
3.1
23
87
0
97
40
8
18
32
1.80
19661--19720
23
2.6
23
83
0
66
45
10
11
33
1.74
19604--19815
87
2.4
87
94
0
370
44
11
12
31
1.78
19377--19807
197
2.2
197
88
1
650
44
11
11
32
1.76
19748--19807
23
2.6
23
81
0
66
43
10
15
31
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20370--20811
200
2.2
197
86
3
602
30
14
13
40
1.85
21026--21094
24
2.9
25
79
18
76
43
1
2
52
1.25
21494--21558
32
2.0
32
91
5
105
38
21
6
33
1.78
30289--30345
28
2.0
28
100
0
114
29
17
21
31
1.96
39010--39081
24
3.0
25
86
8
69
9
13
25
51
1.72
39019--39074
14
4.3
14
80
17
75
7
14
25
53
1.66
39020--39094
24
3.1
23
86
3
96
10
12
21
56
1.66
39894--39934
11
3.6
11
87
6
64
26
17
26
29
1.97
40159--40219
32
1.9
32
89
0
95
11
14
21
52
1.73
40159--40217
16
3.7
16
86
0
82
10
15
22
52
1.72
42479--42622
76
1.9
77
83
2
191
35
6
9
48
1.61
42721--42750
16
1.9
16
93
6
53
30
10
0
60
1.30
46027--46069
19
2.3
19
84
4
52
53
0
2
44
1.13
48973--49048
2
38.0
2
100
0
152
50
0
0
50
1.00
51735--51774
19
2.1
19
100
0
80
42
17
0
40
1.49
54029--54068
21
1.9
21
89
0
62
10
25
40
25
1.86
54051--54110
20
2.8
22
82
10
70
18
25
36
20
1.94
71022--71085
27
2.3
27
78
7
67
46
9
1
42
1.45
71984--72060
29
2.5
31
79
4
95
41
7
23
27
1.81
72458--72522
23
2.8
23
95
0
112
35
9
9
46
1.68
74059--74181
39
3.2
39
91
0
201
21
17
29
30
1.97
77506--77615
52
2.1
52
91
3
177
27
19
34
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78303--78339
17
2.1
19
85
10
51
21
0
2
75
0.92
81465--81525
32
1.9
32
89
0
95
13
16
8
62
1.53
85772--85869
31
3.2
31
86
5
144
53
10
11
25
1.68
87140--87227
34
2.6
34
96
1
158
21
22
15
39
1.91
93728--93787
31
1.9
31
86
0
84
31
21
25
21
1.98
95274--95320
2
23.5
2
100
0
94
48
0
51
0
1.00

Tables:   1

The End!