genome.fa.s2790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002790.1 Hibiscus syriacus cultivar Beakdansim tig00005749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128006

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6448--6480	17	1.9	17	93	0	57	33	9	15	42	1.78
11395--11455	20	3.0	20	87	2	77	26	24	21	27	1.99
11783--11842	30	2.0	30	96	0	111	30	5	20	45	1.72
11926--12054	8	18.0	8	67	23	65	23	34	15	26	1.94
11934--12010	21	3.7	21	96	0	136	19	37	16	25	1.93
12073--12147	20	3.7	20	83	3	87	21	29	18	30	1.97
13557--13585	14	2.0	15	93	6	51	55	0	37	6	1.27
15365--15424	30	2.0	30	93	0	102	31	5	18	45	1.71
15508--15607	8	14.0	8	67	24	55	25	34	16	25	1.95
15508--15606	21	4.7	21	83	12	123	24	34	16	25	1.95
15536--15603	13	5.0	13	70	19	50	27	30	16	25	1.96
15626--15692	20	3.3	21	91	4	102	19	29	20	29	1.97
15653--15705	13	4.6	12	75	22	51	18	33	18	28	1.95
15651--15726	33	2.3	33	95	0	116	18	31	21	28	1.97
15626--15733	33	2.8	40	73	23	115	19	29	20	30	1.97
15672--15705	12	2.7	13	90	4	52	17	35	20	26	1.95
16795--16846	20	2.9	19	75	18	58	21	23	23	32	1.98
18375--18711	156	2.2	156	88	2	489	39	7	18	34	1.78
20795--20839	21	2.1	21	88	8	65	44	2	11	42	1.52
23735--23809	16	5.3	16	65	28	62	18	8	0	73	1.07
23731--23809	27	2.9	27	100	0	158	18	7	0	73	1.06
31613--31645	7	4.6	7	96	3	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34280--34346	29	2.2	30	84	10	84	16	8	17	56	1.65
34443--34467	2	12.5	2	100	0	50	48	0	0	52	1.00
35151--35175	2	12.5	2	100	0	50	52	0	0	48	1.00
38709--38753	18	2.6	17	89	6	65	48	2	20	28	1.61
39315--39393	36	2.2	37	93	6	135	37	39	10	12	1.77
39530--39611	33	2.6	32	94	3	139	37	40	12	9	1.76
39563--40127	221	2.6	218	86	8	796	38	27	11	23	1.89
44929--44984	21	2.7	21	94	0	103	17	30	26	25	1.97
45474--45513	19	2.1	19	100	0	80	42	17	0	40	1.49
50325--50359	3	11.7	3	100	0	70	68	31	0	0	0.90
58516--58571	21	2.7	21	88	0	94	19	30	25	25	1.98
59706--59751	23	2.0	23	95	0	83	26	23	17	32	1.97
61581--62121	41	13.2	41	89	0	805	22	20	24	32	1.98
62993--63601	41	14.8	41	92	0	1002	30	23	22	23	1.99
63380--63449	21	3.4	21	68	18	65	25	30	24	20	1.99
68356--68404	8	6.6	7	82	13	62	57	0	0	42	0.99
85450--85525	39	1.9	39	91	0	125	50	15	6	27	1.69
85460--85534	39	1.9	39	94	0	132	46	14	8	30	1.73
85682--85719	19	2.0	19	85	10	51	28	15	7	47	1.74
87446--87503	30	1.9	30	82	6	73	32	22	8	36	1.85
89062--89141	36	2.2	37	82	6	92	18	11	38	31	1.86
97179--97236	21	2.7	21	82	12	73	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97180--97236	22	2.6	22	81	10	73	50	0	0	49	1.00
97611--97639	12	2.3	13	94	5	51	55	0	0	44	0.99
102853--102895	18	2.4	18	96	0	77	34	30	20	13	1.92
106278--106626	188	1.9	183	81	5	425	41	18	18	21	1.90
108661--108694	16	2.1	17	88	5	52	55	5	0	38	1.24
108809--108890	24	3.5	24	73	11	71	12	13	17	57	1.65
111036--111079	22	2.0	22	100	0	88	27	18	13	40	1.88
112901--113148	123	2.0	121	83	7	313	43	8	9	38	1.67
113269--113315	23	2.0	24	87	4	69	65	2	0	31	1.04
113305--113358	21	2.5	20	78	21	65	59	3	0	37	1.15
113282--113367	11	7.8	11	71	19	63	63	3	0	32	1.11
113282--113379	23	4.4	22	75	19	71	64	4	0	31	1.12
114229--114284	21	2.7	19	84	15	76	0	17	1	80	0.80
114229--114297	21	3.2	21	76	13	70	0	15	2	81	0.81
114230--114285	5	10.8	5	74	14	51	0	17	1	80	0.80
114228--114300	33	2.2	33	78	7	87	0	16	4	79	0.88
114711--114796	3	29.7	3	75	15	83	58	0	0	41	0.98
114711--114796	20	4.2	21	84	12	126	58	0	0	41	0.98
114950--115888	76	12.4	76	96	0	1686	34	21	22	21	1.97
116958--117113	54	2.9	54	90	0	240	22	22	16	39	1.92
119102--119324	114	2.0	114	89	0	347	31	19	14	34	1.92
127165--127198	15	2.2	16	89	5	52	61	0	5	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127319--127364	23	2.0	23	86	0	65	65	2	0	32	1.05
127340--127402	18	3.4	18	72	23	60	61	4	0	33	1.17
127354--127401	19	2.6	18	90	6	78	60	4	0	35	1.16

Tables:   1

The End!