genome.fa.s2792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002792.1 Hibiscus syriacus cultivar Beakdansim tig00005752_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82948

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6452--6521	20	3.5	20	98	0	131	31	20	18	30	1.96
11151--11207	20	2.8	20	97	0	105	28	12	21	38	1.89
11893--11944	21	2.4	22	87	9	72	28	26	17	26	1.97
14995--15029	18	1.9	18	88	0	52	25	31	20	22	1.98
17385--17472	14	6.3	14	72	15	56	39	23	0	36	1.55
17421--17472	14	3.7	14	78	0	59	40	25	0	34	1.56
17633--17674	2	21.0	2	100	0	84	0	50	0	50	1.00
17674--17704	2	15.5	2	93	0	53	48	0	3	48	1.17
20347--20416	3	23.7	3	85	2	97	68	0	2	28	1.04
21765--21821	25	2.3	26	78	9	64	54	5	1	38	1.33
25873--25897	4	6.2	4	100	0	50	24	0	0	76	0.80
25915--26200	118	2.3	116	84	8	365	24	12	16	46	1.81
25994--26229	118	2.0	118	85	4	325	24	14	13	47	1.80
26240--26433	32	5.8	33	76	12	173	27	15	3	53	1.59
26268--26420	70	2.1	74	84	8	199	28	16	3	51	1.60
26298--26381	40	2.2	38	82	4	105	29	16	3	50	1.62
27074--27108	5	6.8	5	96	3	61	17	0	0	82	0.66
33011--33131	64	1.9	63	81	5	145	30	24	12	32	1.92
36037--36083	23	2.0	23	84	8	60	51	0	2	46	1.13
37727--37795	3	23.0	3	85	5	77	57	0	0	42	0.98
37937--38221	124	2.3	119	81	12	346	22	18	15	43	1.87
38163--38254	36	2.6	36	89	0	148	17	23	11	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38198--38474	112	2.5	108	84	8	369	27	20	13	38	1.90
38418--38510	36	2.6	36	98	0	177	19	22	8	49	1.75
38306--38618	144	2.1	147	85	6	420	27	18	12	40	1.87
38146--38719	256	2.2	256	94	1	997	28	19	13	38	1.90
38454--38985	112	4.8	112	82	5	581	29	17	13	39	1.89
38519--38940	219	1.9	215	88	4	632	29	17	14	38	1.89
39690--40167	115	4.2	115	95	0	832	30	20	14	34	1.92
41035--41083	16	2.8	17	81	12	64	48	6	8	36	1.58
52104--52137	17	1.9	17	88	5	50	64	0	2	32	1.08
52638--52684	23	2.0	23	84	8	60	51	0	2	46	1.13
54281--54355	3	25.0	3	83	5	98	61	0	0	38	0.96
54283--54353	12	5.9	12	91	0	115	60	0	0	39	0.97
74621--74651	14	2.1	15	94	5	55	29	19	16	35	1.93
74635--74713	21	3.7	21	73	18	81	30	17	16	35	1.92
75779--75816	15	2.5	15	95	0	67	36	2	23	36	1.69
77189--77224	18	1.9	19	88	5	56	41	5	8	44	1.58
78893--78920	13	2.2	13	100	0	56	25	7	32	35	1.83
80309--80335	6	4.5	6	100	0	54	0	62	18	18	1.32
81524--81582	26	2.2	27	79	14	68	49	1	6	42	1.39
81561--81618	28	2.1	28	83	6	73	53	0	3	43	1.17

Tables:   1

The End!