genome.fa.s2793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002793.1 Hibiscus syriacus cultivar Beakdansim tig00005754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106275

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7346--7379	16	2.1	16	88	0	50	41	0	20	38	1.53
8090--8173	42	2.0	42	100	0	168	38	2	16	42	1.61
8090--8161	23	3.3	23	67	21	73	34	2	16	45	1.62
11051--11099	24	2.0	24	92	0	80	36	12	20	30	1.89
17700--17741	18	2.2	18	87	12	57	83	4	0	11	0.79
19341--19391	21	2.4	21	96	0	93	33	11	17	37	1.86
22155--22211	23	2.5	23	82	0	69	7	24	14	54	1.64
30053--30201	47	3.1	47	81	0	145	27	20	16	34	1.95
30087--30229	24	6.0	24	68	9	96	26	20	16	36	1.94
30160--30263	48	2.2	48	80	3	120	25	20	13	41	1.88
31447--31800	43	8.2	43	78	11	289	24	18	7	50	1.72
31465--31781	130	2.4	129	82	8	367	24	19	6	49	1.72
31465--31817	87	4.1	86	79	8	299	24	18	6	49	1.71
31465--31817	130	2.7	129	82	7	362	24	18	6	49	1.71
37534--37569	18	2.1	17	90	10	56	52	0	2	44	1.15
39776--39801	8	3.2	8	100	0	52	88	0	0	11	0.52
41656--41711	12	4.4	13	75	16	55	35	1	3	58	1.26
41664--41711	3	16.0	3	82	8	53	35	2	4	58	1.29
48249--48280	2	16.0	2	93	0	55	46	0	3	50	1.17
48457--48559	49	2.1	48	85	8	138	74	4	17	2	1.11
48526--48575	15	3.4	15	91	8	77	76	2	18	4	1.04
49601--49735	32	4.2	32	85	1	180	28	14	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49601--49735	65	2.1	64	86	4	182	28	14	23	32	1.95
49841--49929	34	2.6	34	92	0	142	31	21	11	35	1.89
50256--50543	36	8.1	36	72	13	184	26	25	13	35	1.93
50335--50363	15	1.9	15	100	0	58	24	34	13	27	1.93
50300--50399	51	2.0	50	96	2	182	24	29	14	33	1.94
50367--50452	21	4.4	21	71	16	85	24	27	11	36	1.90
50316--50487	57	3.1	56	83	8	194	25	26	12	35	1.92
50516--50553	15	2.5	15	86	0	58	26	23	13	36	1.91
50626--50952	43	7.3	43	79	10	334	27	12	29	30	1.93
50626--50946	129	2.4	129	84	8	392	28	12	29	30	1.93
50764--51000	98	2.4	98	90	2	361	29	12	27	30	1.93
50882--50964	43	1.9	43	87	4	123	27	12	27	32	1.92
51040--51537	90	5.5	90	89	3	766	24	19	21	34	1.97
51729--51782	3	18.0	3	84	7	65	35	1	3	59	1.26
51721--51782	12	5.2	13	80	7	62	35	1	3	59	1.23
53070--53098	2	14.5	2	100	0	58	48	0	0	51	1.00
54784--54853	2	35.0	2	100	0	140	50	0	0	50	1.00
68687--68742	28	2.0	28	85	0	76	44	0	10	44	1.38
71735--71767	2	16.5	2	100	0	66	51	0	0	48	1.00
72370--72427	26	2.2	26	78	6	64	31	5	1	62	1.27
73841--73880	21	1.9	21	94	0	71	47	0	2	50	1.14
73841--73877	11	3.5	11	88	7	58	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74387--74581	99	2.0	99	91	0	318	21	18	26	33	1.96
75666--75729	12	5.6	12	72	10	62	0	20	1	78	0.84
75666--75729	20	3.4	19	79	14	69	0	20	1	78	0.84
87767--87799	17	2.0	17	88	5	50	51	9	15	24	1.72
89058--89110	21	2.5	21	81	6	72	20	26	18	33	1.96
89100--89151	21	2.5	21	87	3	70	38	17	23	21	1.93
89140--89234	20	4.7	20	73	7	84	33	25	18	22	1.97
91239--91327	20	4.4	20	90	2	135	37	24	21	16	1.94
91299--91394	33	2.9	34	84	3	122	41	18	22	16	1.90
91361--91398	20	1.9	20	94	0	67	44	18	23	13	1.85
91394--91456	19	3.3	19	88	4	74	14	15	23	46	1.83
91596--91632	14	2.6	14	86	0	56	48	21	0	29	1.50
93033--93125	42	2.2	42	86	0	132	21	13	40	23	1.89
93059--93121	21	3.0	21	70	9	65	22	11	41	25	1.86
93426--93469	20	2.2	20	91	0	70	52	20	13	13	1.74
93456--93524	20	3.5	20	85	0	93	34	24	23	17	1.96
93605--93680	33	2.3	34	81	2	91	11	19	19	48	1.79
93690--93740	20	2.5	20	93	0	84	13	25	27	33	1.94
95596--95663	20	3.5	20	88	6	95	41	25	17	16	1.89
95672--95721	20	2.6	19	81	9	66	40	18	24	18	1.91
95749--95827	20	4.0	20	83	8	90	12	18	24	44	1.85
96171--96222	22	2.4	22	90	0	77	25	15	40	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96415--96509	20	4.7	20	74	7	93	22	17	26	33	1.96
96442--96530	41	2.2	41	83	4	108	21	19	23	35	1.95
96498--96549	20	2.5	21	87	3	70	21	23	17	38	1.93
96539--96591	21	2.5	22	81	6	74	33	18	26	20	1.96
103453--103487	15	2.4	14	90	4	52	51	0	2	45	1.16
103777--103846	31	2.2	32	80	19	85	48	14	7	30	1.70
105279--105359	35	2.4	35	83	10	105	37	0	1	61	1.04

Tables:   1

The End!