genome.fa.s2794.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002794.1 Hibiscus syriacus cultivar Beakdansim tig00005755_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55613

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191--1217	6	4.5	6	100	0	54	0	62	18	18	1.32
2425--2504	27	2.8	28	77	7	81	51	1	5	42	1.31
7294--7320	6	4.5	6	100	0	54	33	51	14	0	1.43
7759--7789	5	6.4	5	96	3	55	0	41	22	35	1.54
7790--7825	6	6.3	6	96	3	58	0	16	55	27	1.42
7861--7925	21	3.2	19	71	23	60	36	27	16	18	1.93
7831--8297	42	11.2	42	93	2	798	37	23	18	20	1.95
7823--8806	105	9.4	102	76	13	662	36	23	19	21	1.95
7831--8837	42	24.2	40	89	4	702	36	23	19	21	1.95
7831--8837	84	12.1	81	86	6	782	36	23	19	21	1.95
8685--8862	42	4.3	41	88	3	234	37	22	19	21	1.95
10831--10911	27	2.9	26	69	15	72	51	2	8	37	1.46
10832--11048	28	7.5	27	67	22	104	52	2	6	38	1.41
10809--11029	117	1.9	118	88	8	344	51	2	7	38	1.45
10809--11041	59	4.0	60	84	9	320	51	2	7	38	1.43
14790--14817	4	7.0	4	100	0	56	75	0	25	0	0.81
15807--15868	26	2.3	26	81	15	65	32	3	8	56	1.44
15854--15894	20	2.1	19	86	13	57	39	7	2	51	1.43
19538--19562	11	2.3	11	100	0	50	84	0	16	0	0.63
20632--20726	32	3.0	32	92	0	145	29	11	27	31	1.92
20829--20960	36	3.7	35	79	5	138	29	18	12	39	1.88
20975--21072	36	2.7	36	81	6	101	29	17	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21005--21076	36	2.0	36	88	0	108	27	19	12	40	1.88
21125--21317	104	1.9	104	86	0	278	34	17	8	39	1.81
21360--21544	40	4.3	40	66	22	115	25	35	16	22	1.95
21359--21692	134	2.5	131	82	3	384	26	32	17	23	1.97
24247--24294	20	2.3	22	85	7	64	50	2	2	45	1.25
24565--24633	33	2.1	33	97	0	129	23	11	15	49	1.77
27984--28189	39	5.6	36	77	16	212	43	5	10	40	1.61
28113--28140	13	2.2	13	100	0	56	46	7	7	39	1.59
28052--28208	75	2.0	78	84	12	209	43	5	9	40	1.61
28194--28232	20	1.9	21	84	5	53	41	2	10	46	1.51
28264--28315	12	4.8	11	82	17	65	34	0	1	63	1.06
28269--28315	19	2.5	19	85	0	67	34	0	2	63	1.06
31707--31758	20	2.6	20	96	0	95	26	7	21	44	1.79
32361--32409	23	2.1	23	84	0	62	34	14	12	38	1.83
32437--32503	23	2.9	23	90	0	107	34	17	8	38	1.82
32446--32510	23	2.8	23	92	0	103	38	16	9	35	1.81
32361--32597	110	2.2	110	92	0	393	33	13	11	41	1.81
32556--32600	23	2.0	23	90	0	72	37	17	11	33	1.85
34770--34828	29	2.0	29	90	0	91	23	18	20	37	1.94
39150--39305	31	5.0	31	96	1	269	37	23	19	19	1.94
43555--43697	31	4.6	31	96	0	259	39	23	19	18	1.93
50622--50663	22	1.9	22	85	0	57	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53648--53690	18	2.4	18	88	7	61	60	6	32	0	1.23
54194--54255	21	3.0	20	77	13	63	53	6	11	29	1.61

Tables:   1

The End!