Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01002795.1 Hibiscus syriacus cultivar Beakdansim tig00005756_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 61535
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33


Found at i:31142 original size:15 final size:15

Alignment explanation


    Indices: 31122--31151  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      31112 AGTGCATTTA

                           
      31122 ATTGTGTAACTATAT
          1 ATTGTGTAACTATAT

                           
      31137 ATTGTGTAACTATAT
          1 ATTGTGTAACTATAT

      31152 GTTATACTAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47


Consensus pattern (15 bp):   
ATTGTGTAACTATAT

Found at i:31629 original size:54 final size:54

Alignment explanation


    Indices: 31211--31614  Score: 596
    Period size: 54  Copynumber: 7.5  Consensus size: 54

      31201 CCAAATAGGA

                           *   *                                  
      31211 ACTAAGTGTGCAATTTACGGAATTCATCATATGTTGATGAATAACC-TTTCGGC
          1 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC

                      *                                   *       
      31264 ACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGC
          1 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC

                     *                                   *     ** 
      31318 ACTAAGTGTACAATTCACGAAATTCATCATATGTTGATGAATAACTATTTCACC
          1 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC

                                                                   
      31372 ACTAAGTGTGCAATTCAC-AGAATTCATCATATGTTGATGAATAACCATTTCGGC
          1 ACTAAGTGTGCAATTCACGA-AATTCATCATATGTTGATGAATAACCATTTCGGC

                                       *                       ** 
      31426 ACTAAGTGTGCAATTCACGAAATTCATTATATGTTGATGAATAACCATTTCACC
          1 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC

                     *                                  * *   *   
      31480 ACTAAGTGTACAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTAGGC
          1 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC

             *        *                                           
      31534 ATTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC
          1 ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC

                **       **            
      31588 ACTATCTGTGCAACCCACGAAATTCAT
          1 ACTAAGTGTGCAATTCACGAAATTCAT

      31615 AATGAGTTTA


Statistics
Matches: 313,  Mismatches: 35, Indels: 5
        0.89            0.10        0.01

Matches are distributed among these distances:
  53   44  0.14
  54  268  0.86
  55    1  0.00

ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33


Consensus pattern (54 bp):   
ACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGC
Done.