genome.fa.s2796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002796.1 Hibiscus syriacus cultivar Beakdansim tig00005757_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103822

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10189--10261	18	4.1	18	72	11	62	54	4	1	39	1.28
9388--10500	556	2.0	552	98	1	2165	42	9	9	38	1.70
11008--11045	2	19.5	2	94	5	69	47	0	0	52	1.00
21334--21370	16	2.3	16	100	0	74	24	5	24	45	1.74
36119--36161	2	21.5	2	100	0	86	51	0	0	48	1.00
42364--42418	17	3.1	17	72	25	51	52	27	12	7	1.65
42364--42424	19	3.3	19	72	9	63	52	27	13	6	1.64
51333--51382	2	27.0	2	80	15	63	48	0	0	52	1.00
51473--51552	2	40.5	2	97	2	153	48	0	0	51	1.00
51586--51660	18	4.1	18	71	19	57	22	5	1	70	1.15
51718--51792	30	2.5	30	75	16	75	26	6	5	61	1.43
52492--52532	18	2.3	18	100	0	82	34	4	24	36	1.77
57173--57324	78	1.9	78	82	7	191	55	9	23	11	1.63
58164--58324	43	3.4	43	66	22	117	34	23	18	22	1.96
58060--58641	99	5.9	99	83	6	734	34	24	17	22	1.96
58064--58640	300	1.9	300	96	0	1055	34	24	17	22	1.96
58065--58633	193	2.9	194	84	7	736	34	24	17	22	1.96
60200--60384	2	98.0	2	70	24	82	38	3	3	54	1.33
60408--60482	18	4.1	18	71	19	57	22	5	1	70	1.15
63102--63127	2	13.0	2	100	0	52	50	0	0	50	1.00
72184--72237	12	4.5	12	80	0	63	35	20	0	44	1.52
72177--72237	18	3.4	18	80	8	70	34	21	0	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72370--72460	46	2.0	46	93	0	155	34	25	21	18	1.96
72357--72463	23	4.7	23	76	2	99	34	26	21	17	1.96
72589--72736	45	3.3	45	80	3	172	29	18	12	40	1.86
72660--72736	15	5.2	14	72	16	57	29	18	12	38	1.88
77428--77478	21	2.5	21	87	9	70	27	19	19	33	1.96
90539--90695	64	2.4	63	80	10	158	28	18	20	33	1.96
97441--97593	63	2.4	63	81	5	166	28	18	18	33	1.95
98980--99028	20	2.4	20	80	13	55	69	0	2	28	1.00
99644--99673	12	2.5	12	94	0	51	26	23	16	33	1.96

Tables:   1

The End!