Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002797.1 Hibiscus syriacus cultivar Beakdansim tig00005760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85145

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2439--2473
4
9.2
4
87
12
56
0
74
0
25
0.82
2439--2473
15
2.3
15
100
0
70
0
74
0
25
0.82
4540--4569
9
3.2
9
95
4
51
43
0
0
56
0.99
12336--12378
2
21.5
2
100
0
86
51
0
0
48
1.00
15450--15484
18
1.9
18
88
0
52
34
8
5
51
1.56
15891--15930
21
1.9
21
94
0
71
32
30
15
22
1.94
15956--15994
19
2.1
19
95
0
69
20
38
15
25
1.92
15891--16055
64
2.5
65
84
6
192
32
25
15
26
1.96
15891--16100
64
3.2
63
80
7
190
31
25
15
27
1.96
21863--21942
24
3.5
22
75
14
83
23
26
22
27
2.00
24442--24481
21
1.9
21
94
0
71
32
30
15
22
1.94
24507--24545
19
2.1
19
95
0
69
20
38
15
25
1.92
24442--24671
64
3.5
64
78
11
186
32
26
15
26
1.95
24623--24671
19
2.6
19
84
9
57
24
30
18
26
1.98
28867--28927
22
2.8
22
90
5
88
31
19
22
26
1.98
31300--31347
15
3.1
15
75
21
53
60
31
0
8
1.26
31304--31352
16
3.0
17
75
24
52
59
30
0
10
1.31
33288--33355
20
3.2
21
78
14
70
32
16
23
27
1.96
43695--43719
3
8.3
3
100
0
50
32
68
0
0
0.90
45300--45359
20
3.0
20
100
0
120
50
5
20
25
1.68
45636--45691
20
2.8
20
74
12
62
35
12
25
26
1.91
46489--46571
23
3.7
23
80
6
100
25
21
25
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46489--46584
23
4.3
22
80
11
99
26
19
25
29
1.99
50133--50225
30
3.1
30
83
4
91
45
6
15
33
1.71
50144--50225
30
2.8
30
83
5
96
46
7
13
32
1.71
50315--50346
16
2.0
16
100
0
64
12
0
31
56
1.37
53389--53428
20
2.0
20
95
0
71
35
22
20
22
1.96
59881--59920
20
2.0
20
100
0
80
35
20
20
25
1.96
67125--67200
23
3.4
23
81
3
102
22
22
26
28
1.99
68104--68138
16
2.1
17
89
5
54
68
5
2
22
1.24
71290--71385
30
3.2
31
79
5
81
34
27
19
18
1.96
71344--71438
31
3.1
31
76
3
102
33
21
17
27
1.96
72557--72713
64
2.5
64
76
12
153
26
19
20
33
1.96
73618--73687
29
2.4
30
90
2
106
38
11
17
32
1.85
73839--73864
12
2.2
12
100
0
52
34
19
15
30
1.93
76124--76157
17
2.0
17
100
0
68
17
17
23
41
1.90
79873--79923
21
2.5
21
90
3
86
41
9
0
49
1.36
80090--80127
18
2.1
18
90
9
60
60
10
0
28
1.30
80505--80577
21
3.5
21
82
0
101
21
24
31
21
1.98
80570--80658
42
2.1
42
87
0
124
15
22
35
25
1.94

Tables:   1

The End!