genome.fa.s2798.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002798.1 Hibiscus syriacus cultivar Beakdansim tig00005761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181827

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5780--5820	10	3.7	12	81	18	61	21	12	0	65	1.25
6651--6711	32	1.9	32	96	0	113	39	11	19	29	1.87
9268--9321	12	4.5	11	81	9	54	25	11	1	61	1.40
9268--9308	12	3.3	12	87	12	57	26	9	0	63	1.25
9268--9316	25	2.0	24	84	11	64	22	12	0	65	1.26
9320--9363	19	2.3	20	84	7	65	13	15	0	70	1.17
16984--17027	22	2.0	22	100	0	88	18	13	45	22	1.84
17209--17306	47	2.1	48	81	9	112	31	14	22	31	1.94
24352--24474	42	2.9	42	90	2	192	29	20	19	30	1.97
24405--24472	22	3.2	21	68	16	59	27	20	19	32	1.97
24434--24617	93	2.0	93	91	0	296	33	16	20	29	1.94
24613--24707	42	2.3	40	85	5	118	24	21	22	32	1.98
25071--25385	53	5.9	53	86	1	450	31	20	27	20	1.97
25570--25633	12	5.2	12	71	14	51	29	0	0	70	0.88
25551--25632	9	8.7	9	74	10	56	26	0	2	70	0.99
25572--25613	3	14.0	3	80	9	50	33	0	0	66	0.92
25578--25613	15	2.3	16	85	9	56	36	0	0	63	0.94
29363--29403	18	2.3	18	100	0	82	48	17	17	17	1.81
30759--30814	16	3.4	16	75	18	53	53	1	0	44	1.11
30924--30949	12	2.2	12	100	0	52	0	50	0	50	1.00
30990--31135	40	3.7	40	96	0	256	55	14	2	27	1.53
31004--31110	14	8.0	13	70	18	62	57	14	1	25	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32532--32597	28	2.4	27	82	7	78	54	6	9	30	1.56
32774--32807	17	2.1	16	88	5	50	38	2	0	58	1.13
32774--32807	16	2.1	17	88	5	52	38	2	0	58	1.13
34210--34250	18	2.3	18	87	4	57	65	2	4	26	1.25
35700--35760	32	1.9	32	82	0	77	13	26	22	37	1.91
35901--35945	22	2.0	22	83	8	56	44	4	0	51	1.21
42421--42450	2	15.0	2	92	0	51	0	53	0	46	1.00
44911--44959	22	2.3	22	86	10	66	59	2	0	38	1.09
44910--44962	24	2.4	20	82	17	61	60	1	0	37	1.08
46186--46249	31	2.0	32	84	3	85	21	1	43	32	1.62
49502--49545	21	2.1	21	82	0	52	36	9	2	52	1.46
49554--49615	27	2.3	27	88	0	88	48	24	14	12	1.79
50729--50761	17	1.9	17	93	0	57	45	12	9	33	1.73
67961--68006	13	3.5	13	90	0	74	15	23	0	60	1.34
69140--69185	24	1.9	24	81	0	56	28	28	23	19	1.98
72785--72820	15	2.3	15	90	4	54	44	5	11	38	1.63
73754--73809	15	3.6	15	79	9	67	42	12	12	32	1.80
73757--73807	17	3.1	17	77	11	61	43	11	9	35	1.75
74205--74259	13	4.2	13	75	13	58	49	12	3	34	1.59
74245--74342	33	3.0	32	91	5	153	44	15	7	32	1.73
74337--74376	21	1.9	21	94	0	71	47	7	15	30	1.72
76671--76716	12	3.6	12	81	16	56	17	19	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76670--76709	15	2.9	14	85	14	57	20	17	15	47	1.83
76971--76999	13	2.2	13	100	0	58	44	0	17	37	1.49
87773--87814	21	2.0	21	85	0	57	28	16	28	26	1.97
87880--87948	35	2.0	35	97	0	129	46	8	11	33	1.71
86687--89044	233	10.0	233	76	9	2099	32	15	17	34	1.92
88442--88521	41	2.0	40	85	2	106	26	20	22	31	1.98
88896--88998	42	2.5	42	78	10	106	27	23	20	29	1.99
89318--89600	133	2.1	134	87	1	399	30	22	15	30	1.95
89796--89821	3	8.7	3	100	0	52	34	0	0	65	0.93
89818--89842	4	6.2	4	100	0	50	52	0	0	48	1.00
94156--94189	11	3.1	11	100	0	68	52	0	20	26	1.46
94742--94781	21	1.9	21	84	0	53	27	30	20	22	1.98
95430--95485	22	2.6	22	75	13	71	33	21	12	32	1.91
102167--102224	23	2.5	23	88	0	89	27	22	25	24	2.00
106029--106068	21	1.9	21	90	10	64	32	7	5	55	1.50
113665--113926	131	2.0	131	96	0	488	35	13	20	30	1.91
121446--122584	81	14.1	81	87	1	1606	30	23	11	34	1.91
122745--123005	57	4.6	57	92	1	425	35	18	9	36	1.84
125037--125077	2	20.5	2	100	0	82	48	0	0	51	1.00
128706--128756	15	3.4	16	78	10	54	43	7	19	29	1.79
128887--128932	24	1.9	24	95	0	83	17	28	26	28	1.98
129615--131206	574	2.8	570	83	5	1933	38	16	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134552--134626	30	2.6	29	86	2	96	34	5	16	44	1.70
134548--134796	134	1.9	134	91	0	408	33	11	13	41	1.80
134684--134742	29	2.0	29	93	0	100	33	10	10	45	1.72
137033--137196	84	2.0	84	90	0	256	43	14	15	26	1.85
138848--138872	2	12.5	2	100	0	50	52	0	0	48	1.00
139073--139123	24	2.1	24	82	7	59	41	19	13	25	1.88
143819--143868	24	2.1	24	85	7	66	44	20	10	26	1.82
143865--143904	19	2.1	19	85	0	53	30	17	22	30	1.97
150263--150319	21	2.6	23	75	13	66	73	3	10	12	1.21
150263--150329	22	3.1	21	75	12	64	70	5	11	11	1.33
157301--157330	2	15.0	2	100	0	60	50	0	0	50	1.00
161369--161823	118	3.8	118	80	4	495	23	19	15	41	1.90
162080--162130	24	2.2	22	83	13	59	7	17	19	54	1.67
175348--175650	152	2.0	154	94	1	529	34	22	13	29	1.92

Tables:   1

The End!